View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20057_low_5 (Length: 559)
Name: NF20057_low_5
Description: NF20057
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20057_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 34623036 - 34622812
Alignment:
| Q |
11 |
cacagaacaccaccttgattttaacggattcaccgtcaatccaaacatacactgaactcatccctcatccagataaaaagttaagctataccgacaattc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34623036 |
cacaaaacaccaccttgattttaacggattcaccgtcaatccaaacatacactgaactcatccctcatccagataaaaagttaagctataccgacaattc |
34622937 |
T |
|
| Q |
111 |
acactaaaggcatatccggtacacagatgcatggatcaatacattatctcaaattactatcggtcttaatacgaatcaatgtttcatagttttaagctaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34622936 |
acactaaaggcatatccggtacacagatgcatggatcaatacattatctcaaattactatcggtcttaatacgaatcaatgtttcatagttttaagttaa |
34622837 |
T |
|
| Q |
211 |
aatatgtagtaggaaattgatattc |
235 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
34622836 |
aatatgtagtaggaaattgatattc |
34622812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 34750415 - 34750251
Alignment:
| Q |
71 |
tccctcatccagataaaaagttaagctataccgacaattcacactaaaggcatatccggtacacagatgcatggatcaatacattatctcaaattactat |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34750415 |
tccctcatccagataaaaagttaagctataccgacaattcacactaaaggcatatccggtacacagatgcatggatcaatacattatctcaaattactat |
34750316 |
T |
|
| Q |
171 |
cggtcttaatacgaatcaatgtttcatagttttaagctaaaatatgtagtaggaaattgatattc |
235 |
Q |
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| T |
34750315 |
cggtcttaatacgaatcaatgtttcatagttttaagttaaaatatgtagtaggaaattgatattc |
34750251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 34622777 - 34622619
Alignment:
| Q |
270 |
gtacattgaatggaatttatccatcatccagataaaagttttaagctatgcaacatcgacatgacacagacaaatatacagttatattcaaatatttcat |
369 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622777 |
gtacattgaatggaatttatcgatcatccagataaaagttttaagctatgcaacatcgacatgacacagacaaatatacagttatattcaaatatttcat |
34622678 |
T |
|
| Q |
370 |
tttctcagtatatttggtgtcaacgtgtcggcatcaatgtttcgtaggttttaaggtct |
428 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622677 |
tttctcagtatatttggtgtcaacgtgtcggcatcaatgtttcgtaggttttaaggtct |
34622619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 34750216 - 34750058
Alignment:
| Q |
270 |
gtacattgaatggaatttatccatcatccagataaaagttttaagctatgcaacatcgacatgacacagacaaatatacagttatattcaaatatttcat |
369 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34750216 |
gtacattgaatggaatttatcgatcatccagataaaagttttaagctatgcaacatcgacatgacacagacaaatatacagttatattcaaatatttcat |
34750117 |
T |
|
| Q |
370 |
tttctcagtatatttggtgtcaacgtgtcggcatcaatgtttcgtaggttttaaggtct |
428 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34750116 |
tttctcagtatatttggtgtcaacgtgtcggcatcaatgtttcgtaggttttaaggtct |
34750058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 270 - 428
Target Start/End: Complemental strand, 34739031 - 34738871
Alignment:
| Q |
270 |
gtacattgaatggaatttatccatcatccagataaaagttttaagctatgcaacatcgacatgacacagacaaatatacagttatattcaaatatttcat |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34739031 |
gtacattgaatggaatttatccatcatccagataaaagttttaagctatgcaacaccgacatgacacagacaaatatacagttatattcaaatatttcat |
34738932 |
T |
|
| Q |
370 |
tttctcagtatat--ttggtgtcaacgtgtcggcatcaatgtttcgtaggttttaaggtct |
428 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
34738931 |
tttctcagtatattattggtgtcaacgtgtcggtatcaatgtttcgtaggttttacggtct |
34738871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 43 - 181
Target Start/End: Complemental strand, 34595089 - 34594949
Alignment:
| Q |
43 |
ccgtcaatccaaacatacactgaactcatccctcatccagataaaaagttaagct-----ataccgacaattcacactaaaggcatatccggtacacaga |
137 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| |
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| T |
34595089 |
ccgtcaatccaaacatacaccgaattcatccctcatccagataaaaagttaagctatgtaatgccgacaattcacactaaaggcatatctggtacac--- |
34594993 |
T |
|
| Q |
138 |
tgcatggatcaatacattatctcaaattactatcggtcttaata |
181 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||| |
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| T |
34594992 |
gtcatggatcgatacattatctcaaattagtatcggtcttaata |
34594949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 34739311 - 34739134
Alignment:
| Q |
11 |
cacagaacaccaccttgattttaacggattcaccgtcaatccaaacatacactgaactcatccctcatccagataaaaagttaagcta-----taccgac |
105 |
Q |
| |
|
|||| ||||||||| ||||||||| | | || |||||||||||||||| |||||| |||||||||||| |||||||||||||||||| | | ||| |
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| T |
34739311 |
cacaaaacaccaccgtgattttaatgaactcgtcgtcaatccaaacataaactgaattcatccctcatctagataaaaagttaagctatgtagtgctgac |
34739212 |
T |
|
| Q |
106 |
aattcacactaaaggcatatccggtacacagatgcatggatcaatacattatctcaaattactatcggtcttaatacg |
183 |
Q |
| |
|
| ||||||| |||||||||||||||||||||| | ||| || |||||||||||||||||| ||| |||||||||||| |
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| T |
34739211 |
acttcacacaaaaggcatatccggtacacagacacgtggttcgatacattatctcaaattattattggtcttaatacg |
34739134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 34622554 - 34622506
Alignment:
| Q |
493 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaagg |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34622554 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaagg |
34622506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 34738806 - 34738758
Alignment:
| Q |
493 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaagg |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34738806 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaagg |
34738758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 34749993 - 34749945
Alignment:
| Q |
493 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaagg |
541 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34749993 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaagg |
34749945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 493 - 540
Target Start/End: Complemental strand, 34594550 - 34594503
Alignment:
| Q |
493 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaag |
540 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34594550 |
gtacacattctgaaagctagaaattgagccaacactccaactcttaag |
34594503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 34739111 - 34739066
Alignment:
| Q |
190 |
tgtttcatagttttaagctaaaatatgtagtaggaaattgatattc |
235 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
34739111 |
tgtttcatagttttaagctaaaatatgcagtaggaaattgatattc |
34739066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 34594837 - 34594780
Alignment:
| Q |
272 |
acattgaatggaatttatccatcatccagataaaagttttaagctatgcaacatcgaca |
330 |
Q |
| |
|
|||||||||| |||||||||||||||| ||| ||||||||||||||||||||| ||||| |
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| T |
34594837 |
acattgaatgaaatttatccatcatcc-gatgaaagttttaagctatgcaacaccgaca |
34594780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 34594916 - 34594878
Alignment:
| Q |
197 |
tagttttaagctaaaatatgtagtaggaaattgatattc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34594916 |
tagttttaagctaaaatatgtagtaggaaattgatattc |
34594878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 34594726 - 34594677
Alignment:
| Q |
326 |
cgacatgacacagacaaatatacagttatattcaaatatttcattttctc |
375 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| |||||||||||||| |
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| T |
34594726 |
cgacacgacacagacaaatatatagttacattcaactatttcattttctc |
34594677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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