View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_12 (Length: 505)
Name: NF20058_high_12
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_12 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 2600597 - 2601104
Alignment:
| Q |
1 |
acgtcaagaaccttgatattgttgagaatcacagtcaaatacaactgatgaggtcaaagagacataaaaaccaagatggcaaggccacaattgtgatcgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2600597 |
acgtcaagaaccttgatattgttgagaatcacagtcaaatacaactgatgaggtcaaagagacataaaaaccaagatggcaaggccacaattgtgattgg |
2600696 |
T |
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| Q |
101 |
taccatgtttggattgtgtgcagtgtgactgcacgcaataggtcacatcttaaccatccgatttcaatgcaaatttttgttgttctttttaaatttcgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2600697 |
taccatgtttggattgtgtgcagtgtgactgcacgcaataggtcacatcttaaccatccaatttcaatgcaaatttttgttgttctttttaaatttcgaa |
2600796 |
T |
|
| Q |
201 |
taataagctagaaatttggacggtttgatattgtccaaacataccaaatgtttgagctatgaatactagaaaaagttcaattagcgacagaaaatagaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
2600797 |
taataagctagaaatttggacggtttgatattgtccaaacataccaaatgtttgagcaatcaatactagaaaaagttcaattagcgacagaaaatagaaa |
2600896 |
T |
|
| Q |
301 |
tgaaaaaattgaattaatctgcatttgagggtgtctttaacac--atagagacggacttcatgtttttctgtctcttaacttttcgccgttgattcaaat |
398 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
2600897 |
tgaaaaaattgaattaatctgcatttgagggtgtcttcaacacatatagagacggacttcatgtttatctgtctcttaacttttcgtcgttgattcaaat |
2600996 |
T |
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| Q |
399 |
ttttcttagtattattaattgaatggaatgagataaagggttaaagtataatt-acaatccaccaattgcgattgaaactccagctgaataaacggtacc |
497 |
Q |
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| T |
2600997 |
ttttctcagtattattaattgaatggaatgagataaagggttaaagtataattaaaaatccaccaattgcgattgaaactccaactgaataaacggtacc |
2601096 |
T |
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| Q |
498 |
acctttag |
505 |
Q |
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|||||||| |
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| T |
2601097 |
acctttag |
2601104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 270 - 505
Target Start/End: Original strand, 2573390 - 2573625
Alignment:
| Q |
270 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattaatctgcatttgagggtgtctttaacacatagagacggacttcatgtttttctg |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||| || | | ||||| ||||||||||||||||||||||||||||| || |
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| T |
2573390 |
aaaaagttcaattagcgacagaaaatagaaatgaaaaaattgaattactatgcaatt-atgatgtctctaacacatagagacggacttcatgtttttttg |
2573488 |
T |
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| Q |
370 |
tctcttaacttttcgccgttgattcaaattttt-cttagtattattaattgaatggaatgagataaagggttaaagtataattacaatccaccaattgcg |
468 |
Q |
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| T |
2573489 |
tatcttaacttttcgtcgctgattcaacttttttctgaatagtattaattgaatggaatgagataaagggttaaagtataattacaatcctccaagtgtt |
2573588 |
T |
|
| Q |
469 |
attgaaactccagctgaataaacggtaccacctttag |
505 |
Q |
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||||||| |||| |||||||||| ||||||||||||| |
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| T |
2573589 |
attgaaattccaactgaataaacagtaccacctttag |
2573625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 2573032 - 2573214
Alignment:
| Q |
1 |
acgtcaagaaccttgatattgttgagaatcacagtcaaatacaactgatgaggtcaaagagacataaaaaccaagatggcaaggccacaattgtgatcgg |
100 |
Q |
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|||||| || |||||||| |||||||||||| ||||| |||| || | ||||||| ||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
2573032 |
acgtcatgatccttgatactgttgagaatcatagtcagatacgaccaacgaggtcatggagacttaaaaaccatgatggcaaggccacaattgtgatcgg |
2573131 |
T |
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| Q |
101 |
ta---ccat---gtttggattgtgtgcagtgtgactgcacgcaataggtcacatcttaaccatccgatttcaatgcaaatttt |
177 |
Q |
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|| ||| |||| ||||||||||||||| |||||| |||||| |||||||||||||| || |||||||||||||||||| |
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| T |
2573132 |
tatgtacattgggtttagattgtgtgcagtgtaactgcaagcaatatgtcacatcttaaccgtctgatttcaatgcaaatttt |
2573214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 505
Target Start/End: Original strand, 2645804 - 2645885
Alignment:
| Q |
424 |
gaatgagataaagggttaaagtataattacaatccaccaattgcgattgaaactccagctgaataaacggtaccacctttag |
505 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||| | ||| ||||| | |||||| ||||||||||||| |
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| T |
2645804 |
gaatgagataaagggtaaaagtataattacaatccaccaagtgctaaggaagctccaacattataaacagtaccacctttag |
2645885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 429 - 505
Target Start/End: Complemental strand, 2585667 - 2585591
Alignment:
| Q |
429 |
agataaagggttaaagtataattacaatccaccaattgcgattgaaactccagctgaataaacggtaccacctttag |
505 |
Q |
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|||| |||||| || ||||| |||| ||||| ||||||| | ||||| |||| |||||||||||||||||||||||| |
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| T |
2585667 |
agatgaagggtaaaggtatacttacgatccagcaattgctaatgaaaatccaactgaataaacggtaccacctttag |
2585591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 467
Target Start/End: Complemental strand, 2432192 - 2432140
Alignment:
| Q |
415 |
aattgaatggaatgagataaagggttaaagtataattacaatccaccaattgc |
467 |
Q |
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||||||| ||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
2432192 |
aattgaacggaatgagataaagggtattagtatacttacaatccaccaattgc |
2432140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 2298888 - 2298846
Alignment:
| Q |
108 |
tttggattgtgtgcagtgtgactgcacgcaataggtcacatct |
150 |
Q |
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| T |
2298888 |
tttggattgtgtgtagtgtgactgcacgcaatgagtcacatct |
2298846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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