View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_17 (Length: 457)
Name: NF20058_high_17
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 1242879 - 1242710
Alignment:
| Q |
131 |
cgatagaaactatgaaaagtatttaatagaaaattcttttagtaattgtacttagacttttcaactcattcatt-ttttaatttcaccattttctaaaaa |
229 |
Q |
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| T |
1242879 |
cgatagaaactatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatttttttaatttcaccattttctaaaaa |
1242780 |
T |
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| Q |
230 |
tacttttcgaccacggcttcagctt---ttcttctaccccattttactacttcccaacaagtctcatcta |
296 |
Q |
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| T |
1242779 |
tacttttcgaccaccgcttcagcttttgttcttctaccccattttactacttcccaacaagtctcatcta |
1242710 |
T |
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Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 41521189 - 41521282
Alignment:
| Q |
141 |
tatgaaaagtatttaatagaaaattcttttagtaattgtacttagacttttcaactcattcattttttaatttcaccattttctaaaaatactt |
234 |
Q |
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| T |
41521189 |
tatgaaaagtatttaatagaaaattcttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatactt |
41521282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 300
Target Start/End: Original strand, 41521310 - 41521343
Alignment:
| Q |
267 |
attttactacttcccaacaagtctcatctaaatt |
300 |
Q |
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| T |
41521310 |
attttactacttcccaacaagtctcatctaaatt |
41521343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 167 - 300
Target Start/End: Complemental strand, 473410 - 473268
Alignment:
| Q |
167 |
ttttagtaattgtacttagacttttcaactcattcattttttaatttcaccattttctaaaaatacttttcgaccacggcttcagctt---ttcttctac |
263 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||||| |
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| T |
473410 |
ttttggtaattgtacttagacttttcaactcattcatcttttgatttcaccattttctaaaaatacttttcgactgccgcttcagcttttgttcttctac |
473311 |
T |
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| Q |
264 |
c------ccattttactacttcccaacaagtctcatctaaatt |
300 |
Q |
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| T |
473310 |
ccttgaactattttactaattcccaacaactctcatctaaatt |
473268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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