View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_23 (Length: 429)
Name: NF20058_high_23
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 11 - 415
Target Start/End: Complemental strand, 10914801 - 10914399
Alignment:
| Q |
11 |
catcatcaaactcggtggtcacaccaataacttagttaaccnnnnnnncttggccttgaccatagtcaagcttaatcgtggcactatttcttcaggcaca |
110 |
Q |
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| T |
10914801 |
catcagcaaactcggtggtcacaccaataacttggttaaccaaaaaaacttgtccttgaccatagtcaagcttaatcgtggcactatttcttcaggcaca |
10914702 |
T |
|
| Q |
111 |
agctatcctgttgtcggctaggaatggcgtatcagtggcttctaacacagcacacataaaagttcaggcacctggtgacggtgtgcccgtgagtcaacct |
210 |
Q |
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| T |
10914701 |
agctatcctgttgtcggctaggaatggcgtatcagtggcttctaacacagcacacagaaaagttcaggcacctggtgacggtgtgcccgtgagtcaacct |
10914602 |
T |
|
| Q |
211 |
tcaaatgcaccaccctcctctggtcatccaagtcatatatctatttcatcgcatactggcgcacagtcaggaagtggctcaactagcactgatgaattat |
310 |
Q |
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||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |
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| T |
10914601 |
tcaaatgcaccacactcctctagtcatccaagtcctgtatctatttcatcgcatactggtgcacagtcaggcagtggctcaactagcactgatga---at |
10914505 |
T |
|
| Q |
311 |
ttctcgcagttaaagcaactggtgttcccaccgctcctgttagcaatg-cgagcctccataagtaatcgatgccattaccatgctggtgtcaggtatgtt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10914504 |
ttctcgcagttaaagcaactggtgttcccaccgctcctgttagcaatgttgagcctccataagtaattgatgccattaccatgctggtgtcaggtatgtt |
10914405 |
T |
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| Q |
410 |
ggaagt |
415 |
Q |
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|||||| |
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| T |
10914404 |
ggaagt |
10914399 |
T |
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