View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_25 (Length: 410)
Name: NF20058_high_25
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 41847254 - 41847625
Alignment:
| Q |
18 |
acataggtgatctaaaatttgaaccccatgttacattgtattatttctatcaactatgcttaggggacaatgatcgatggagatatttgggatattttaa |
117 |
Q |
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| T |
41847254 |
acataggtgatcgaaaaattgaaccccatattacattgtattatttctatcaactatgcttaggggacaatgat----ggagatatttgggatattttaa |
41847349 |
T |
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| Q |
118 |
caacgaatcattcaagcaaacggcagctacgacggagattggagagcttggaaacgtgaaaccagtgaaaggagaggcttgtggaaccttcaagtaatgg |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847350 |
caacgaatcattcaagcaaacggtagctacgacggagattggagagcttggaaacgtgaaaccagtgaaaggagaggcttgtggaaccttcaagtaatgg |
41847449 |
T |
|
| Q |
218 |
acagcttcttttggtttctcacaagtcatctgtgaggtggatcgcaagctagtacttgatcgcattaattgtcaatagtaaatatagatgagatccttac |
317 |
Q |
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| T |
41847450 |
atagcttcttttggtttctcacaagtcatctgtgaggtggatcgcaagctagtacttgatcacattaattgtcaatagtaaatatagatgagatccttac |
41847549 |
T |
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| Q |
318 |
taaattttgtacaacggacggagcagtgcttatgtggttttaccctccttacaatatttttcatcacactcgtgatt |
394 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41847550 |
taaa-tttgtacaacggacggagcaatgcttatgtggttttaccctccttacaatatttttcatcacactcgtgatt |
41847625 |
T |
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