View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_26 (Length: 407)

Name: NF20058_high_26
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_26
NF20058_high_26
[»] chr2 (11 HSPs)
chr2 (1-404)||(7702434-7702844)
chr2 (102-407)||(27150932-27151229)
chr2 (1-155)||(40016596-40016754)
chr2 (1-403)||(24479157-24479551)
chr2 (1-240)||(30267008-30267248)
chr2 (19-237)||(15513690-15513908)
chr2 (1-240)||(31342571-31342811)
chr2 (1-240)||(44920963-44921202)
chr2 (257-351)||(31481046-31481140)
chr2 (3-176)||(7718192-7718367)
chr2 (19-76)||(41573416-41573473)
[»] chr8 (20 HSPs)
chr8 (1-404)||(14997626-14998027)
chr8 (1-240)||(19369765-19370005)
chr8 (1-240)||(19448453-19448693)
chr8 (1-240)||(19532383-19532623)
chr8 (1-240)||(45355967-45356207)
chr8 (1-240)||(25637649-25637888)
chr8 (1-240)||(28248934-28249170)
chr8 (1-175)||(5650863-5651040)
chr8 (1-240)||(6801679-6801925)
chr8 (5-312)||(17634253-17634562)
chr8 (1-240)||(25638812-25639052)
chr8 (1-175)||(29345436-29345614)
chr8 (129-240)||(18767053-18767163)
chr8 (1-240)||(5528748-5528988)
chr8 (29-337)||(6223434-6223747)
chr8 (117-175)||(29118484-29118542)
chr8 (205-240)||(29345641-29345676)
chr8 (290-403)||(5000975-5001089)
chr8 (19-76)||(6403616-6403673)
chr8 (196-240)||(12105561-12105605)
[»] chr1 (16 HSPs)
chr1 (95-404)||(18308249-18308561)
chr1 (205-404)||(39367828-39368030)
chr1 (19-181)||(28636926-28637091)
chr1 (5-183)||(51758762-51758942)
chr1 (5-183)||(897464-897644)
chr1 (120-185)||(39368547-39368612)
chr1 (290-403)||(47694555-47694667)
chr1 (1-76)||(5911684-5911759)
chr1 (200-349)||(17113133-17113283)
chr1 (5-76)||(16222787-16222858)
chr1 (196-243)||(28637578-28637625)
chr1 (19-76)||(3399645-3399702)
chr1 (19-76)||(12189975-12190032)
chr1 (1-62)||(37097374-37097435)
chr1 (29-76)||(1843985-1844032)
chr1 (5-76)||(13208621-13208692)
[»] chr4 (14 HSPs)
chr4 (95-403)||(37750679-37750989)
chr4 (1-240)||(1684807-1685047)
chr4 (1-240)||(43600272-43600512)
chr4 (1-240)||(1152049-1152289)
chr4 (1-240)||(47065889-47066129)
chr4 (1-240)||(53300356-53300599)
chr4 (95-243)||(27739625-27739774)
chr4 (1-76)||(4881089-4881164)
chr4 (1-76)||(4904160-4904235)
chr4 (19-175)||(21539191-21539348)
chr4 (290-351)||(21317772-21317833)
chr4 (257-351)||(24558807-24558901)
chr4 (19-77)||(24559014-24559072)
chr4 (5-74)||(48464049-48464118)
[»] chr5 (16 HSPs)
chr5 (199-377)||(38449696-38449875)
chr5 (1-240)||(17037548-17037787)
chr5 (1-404)||(31571034-31571424)
chr5 (19-175)||(19985018-19985177)
chr5 (5-170)||(12042099-12042268)
chr5 (1-240)||(5078920-5079159)
chr5 (129-249)||(23616660-23616778)
chr5 (129-249)||(23848057-23848175)
chr5 (1-168)||(30786272-30786441)
chr5 (257-403)||(10869918-10870068)
chr5 (19-183)||(7410847-7411013)
chr5 (196-240)||(7411534-7411578)
chr5 (20-76)||(9333581-9333637)
chr5 (1-76)||(31068983-31069057)
chr5 (19-75)||(10869460-10869516)
chr5 (155-183)||(10869817-10869845)
[»] chr7 (14 HSPs)
chr7 (1-400)||(26620785-26621186)
chr7 (9-400)||(26618795-26619190)
chr7 (1-240)||(9242339-9242579)
chr7 (1-240)||(4685258-4685498)
chr7 (5-168)||(26608464-26608630)
chr7 (119-240)||(3374523-3374644)
chr7 (288-400)||(26608253-26608370)
chr7 (1-138)||(30089740-30089880)
chr7 (129-183)||(8241733-8241787)
chr7 (1-240)||(20277213-20277455)
chr7 (196-240)||(19746823-19746867)
chr7 (1-76)||(26205435-26205510)
chr7 (1-76)||(26224998-26225073)
chr7 (10-76)||(16086501-16086567)
[»] chr6 (20 HSPs)
chr6 (1-243)||(14669198-14669441)
chr6 (1-240)||(17719578-17719818)
chr6 (1-240)||(16734810-16735050)
chr6 (1-237)||(12591838-12592075)
chr6 (1-240)||(11936622-11936862)
chr6 (1-240)||(15361720-15361960)
chr6 (19-240)||(11948602-11948824)
chr6 (288-390)||(30129391-30129496)
chr6 (129-240)||(6684236-6684345)
chr6 (94-183)||(10070754-10070843)
chr6 (1-174)||(23904270-23904447)
chr6 (95-174)||(1942670-1942750)
chr6 (5-76)||(23264516-23264587)
chr6 (257-310)||(34375092-34375146)
chr6 (19-76)||(4485585-4485642)
chr6 (1-73)||(9631178-9631250)
chr6 (8-76)||(10935801-10935869)
chr6 (29-76)||(29667935-29667982)
chr6 (5-46)||(4591159-4591200)
chr6 (198-230)||(30129551-30129583)
[»] chr3 (20 HSPs)
chr3 (1-240)||(13845997-13846237)
chr3 (1-243)||(1627798-1628042)
chr3 (1-240)||(2550171-2550411)
chr3 (5-175)||(27259372-27259536)
chr3 (94-240)||(28745075-28745220)
chr3 (1-183)||(2943126-2943309)
chr3 (1-240)||(7407609-7407849)
chr3 (257-403)||(35083229-35083378)
chr3 (5-240)||(1654585-1654821)
chr3 (199-403)||(25338686-25338896)
chr3 (1-148)||(9633387-9633537)
chr3 (29-174)||(2179960-2180108)
chr3 (5-76)||(26707868-26707939)
chr3 (101-185)||(36035571-36035656)
chr3 (5-76)||(16457351-16457422)
chr3 (141-183)||(35083129-35083171)
chr3 (257-327)||(36035760-36035831)
chr3 (19-76)||(5498501-5498558)
chr3 (195-231)||(2180127-2180163)
chr3 (196-240)||(2943067-2943111)
[»] scaffold0069 (1 HSPs)
scaffold0069 (3-240)||(40553-40791)
[»] scaffold0684 (1 HSPs)
scaffold0684 (1-240)||(602-842)
[»] scaffold0576 (1 HSPs)
scaffold0576 (1-240)||(6704-6944)
[»] scaffold0002 (1 HSPs)
scaffold0002 (263-311)||(446084-446132)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 7702434 - 7702844
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    |||| |||||||||||| ||||| ||  ||||||||| | ||||||  ||||| |||||| | |||||||||||||   || |||||||||| || |||     
T  7702434 acacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaagagcttt- 7702532  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||| | ||||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||        |||    
T  7702533 agttacattttgtagtattatctgtaacatttaaaaattgtcgtaaaatgttacattattataacactttttgtatcactcgtaacactaaaaagt-tat 7702631  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattat---aataga 293  Q
    ||||||||||||||||||||||||||||||| ||| |||||||| ||||||||       |||||| ||||||||||||||||||| |  |   ||||||    
T  7702632 tacatttataatttttgagaagttgtaaaaaatgtcgcaaaattgtccaggctaaaaaattgtgaaactaccaaaaaatgttactactagttgaaataga 7702731  T
Q  294 ttagaaaa--agtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaa 391  Q
    ||| ||||  |||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  7702732 ttaaaaaaaaagtggattatcaataggagtttttgtactcaatctaccacattgaatctagagattgcataagtgtttttacatgatccaagcaaatcaa 7702831  T
Q  392 aatactacatttt 404  Q
    |||||||||||||    
T  7702832 aatactacatttt 7702844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 27151229 - 27150932
Alignment:
Q  102 acattttattgtatttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacat 201  Q
    ||||||||| ||||| |||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||  ||||||||        ||||||||    
T  27151229 acattttatagtatt-ctgtaaaattcaaaatgtgtcgtaaaatgttaccttattgtaacactttttgtatcaccggtaacactaaaaaaaatattacat 27151131  T
Q  202 ttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttac--taattataatagattagaa 299  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| ||       ||||||||||||||||||||||||  |||||||||||||||||||    
T  27151130 ttataatttttaagaagttgtaaaaagtgtcgcaaaattatccagactaaaaaattgtgaatctaccaaaaaatgttactataattataatagattagaa 27151031  T
Q  300 aaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactac 399  Q
    |||||||||||||||||  ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27151030 aaagtggattatcaataagagtt---------aatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactac 27150940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 40016596 - 40016754
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggta---accctattactaaaaagatttt 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||   |||||||||||||| |||||||    
T  40016596 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagagatttt 40016695  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattat 155  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  40016696 aattacattttattgtattatctgtaacattcaaaaagtatcgtaaaatgttacattat 40016754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 24479157 - 24479551
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaacccta---ttactaaaaagatttt 97  Q
    ||||||||||||||||| |||||||||  || ||||||| ||||||| ||||| |||||||| |||| ||||||||  ||    |||||||| || |||     
T  24479157 acacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaagagcttt- 24479255  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||| ||||||| ||||| ||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| ||| | ||||| |        | |    
T  24479256 agttatattttatagtattatctataacattcaaaaagtgtcgtaaaaggttacactattgtaacattttttgtaccaccattaacaattaaaaaatt-t 24479354  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataatagatta 296  Q
    ||||||||| ||||||  ||||||||||| | |||||||||||| |  |||||       |||||||||||||         |||||||    | |||||    
T  24479355 tacatttatcatttttatgaagttgtaaacaatgttgcaaaattgtataggctaaaaaattgtgaatctacca--------cactaatt----ttgatta 24479442  T
Q  297 gaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacat---aattgtttttacatgatccaagcaaatcaaaa 393  Q
    ||||||||||||| || |||| |||||||  | ||||||||||||||| |||||||| || | ||   || ||||||||||| |||||||| ||||| ||    
T  24479443 gaaaaagtggattgtctataggagttttttgactcaatccaccacattaaatctagaaatcatataacaagtgtttttacataatccaagc-aatcacaa 24479541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 30267008 - 30267248
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||| | ||||||| ||||| ||  |||| |||||||||||||   || | |||| ||| || ||||    
T  30267008 acacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagag-tttt 30267106  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | || |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||| |        | |    
T  30267107 agttacattttatagtactatccgtaacaatcaaaaagtgtcgcaaa-tgttacactattgtaacactttttgtataactagtaacaat-aaaaaagtgt 30267204  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||    
T  30267205 tacatttataaattttaagaagttgtaaaaagtgtggcaaaatt 30267248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 15513690 - 15513908
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaacccta---ttactaaaaagattttaattacattttattgtat 115  Q
    ||||||||| |||||||||||  |||||| | ||| || ||||| |||||||||||||  ||    ||||||||||||||| | ||||||||||| |||     
T  15513690 taaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaaaagattt-agttacattttatagtac 15513788  T
Q  116 t-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttga 214  Q
    | |||||| || ||||||||||||| ||  ||||||||||||  ||||||||||||||||||||||||| |        | |||| ||||||||||||||    
T  15513789 tatctgtatcaatcaaaaagtgtcgcaa--tgttacattattagaacactttttgtatcactagtaacaat-taaaaagtgttacgtttataatttttga 15513885  T
Q  215 gaagttgtaaaaagtgttgcaaa 237  Q
    ||||||||||||||||| |||||    
T  15513886 gaagttgtaaaaagtgtcgcaaa 15513908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31342811 - 31342571
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| ||||||||| |||   || | ||||||||  | ||||    
T  31342811 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg-tttt 31342713  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||| | ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  31342712 agttacattttatagtactatctgtaacaatcaaaaagtgttgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 31342615  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  31342614 tacatttataatttttgaggagttgtaaaaaatgtcgcaaaatt 31342571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 44920963 - 44921202
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaacccta---ttactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||  ||||||||||| ||||||| ||||| ||  | || |||||||||||||  ||    |||||||| || ||||    
T  44920963 acacttgaaaattgtaactaaatcaaa-aaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagctcgtgttactaaagag-tttt 44921060  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | || |||||| | ||||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||| |        | |    
T  44921061 agttacattttatagtactatccgtaacaataaaaaaatgtcgcaaa-tgttacactattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 44921158  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||    
T  44921159 tacatttataatttttgagaagttgtaaaaattgtcgcaaaatt 44921202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 257 - 351
Target Start/End: Original strand, 31481046 - 31481140
Alignment:
Q  257 tgtgaatctaccaaaaaatgttactaattataatagattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatcta 351  Q
    |||||||||| ||||| |||||||| |||  | ||||||| ||||||||||||||  |||| | |||||||||||||||||||||||||||||||    
T  31481046 tgtgaatctatcaaaagatgttactgattgaagtagattaaaaaaagtggattatttataggattttttgtagtcaatccaccacattgaatcta 31481140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 7718192 - 7718367
Alignment:
Q  3 acttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaa 99  Q
    ||||||||||| | | ||||||||| ||||| ||||| ||||||| ||||| ||  |||| ||||||||| |||   || | |||||||| || ||||||    
T  7718192 acttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaagag-ttttaa 7718290  T
Q  100 ttacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcact 176  Q
    ||||||||||| ||| | || |||| | | ||||| |||||  ||||||| |||||||||||||||||||||||||||    
T  7718291 ttacattttatagtactatccgtaataataaaaaaatgtcg-caaatgttgcattattgtaacactttttgtatcact 7718367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 41573416 - 41573473
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| ||||||||||| ||||||| ||||| || || || |||||||||||||    
T  41573416 taaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaa 41573473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 14997626 - 14998027
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||||||| ||| ||||| |||||||||||| |||||  ||||| |||||| | |||||||||||||   || | |||||||| || |||     
T  14997626 acacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagagcttt- 14997724  T
Q  98 aattacattttattgtattt-ctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | |||| |||||| |||||  |||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||  ||||||||        | |    
T  14997725 agttaccttttatagtattaactgtaacattcaaaaaatgtcgcaaaacattacattattgtaacactttttgtatcaccggtaacactaaaaaaa-tgt 14997823  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataatagatta 296  Q
    |||||||||||||||||| |||||||||||||| |||||||||| |||||  |       |||||||||||||||||||||||||||||  |||||||||    
T  14997824 tacatttataatttttgataagttgtaaaaagttttgcaaaattgtccagattaaaaaattgtgaatctaccaaaaaatgttactaattgaaatagatta 14997923  T
Q  297 g-aaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaata 395  Q
    | |||||||| |||||  |||| ||||||| || ||||     | ||||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||    
T  14997924 gaaaaaagtgaattatttataggagtttttatactcaa-----cccattgaatctagaaattacgtaagtgtttttacatgatccaagcaaattaaaata 14998018  T
Q  396 ctacatttt 404  Q
    |||||||||    
T  14998019 ctacatttt 14998027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19370005 - 19369765
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || ||||    
T  19370005 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-tttt 19369907  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||||| ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |    
T  19369906 agttacattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 19369809  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  19369808 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 19369765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 19448453 - 19448693
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || ||||    
T  19448453 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-tttt 19448551  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||| ||||||| ||||| ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |    
T  19448552 agttatattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 19448649  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  19448650 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 19448693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 19532623 - 19532383
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || ||||    
T  19532623 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-tttt 19532525  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||| ||||||| ||||| ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |    
T  19532524 agttatattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 19532427  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  19532426 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 19532383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 45356207 - 45355967
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||    
T  45356207 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 45356109  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  45356108 agttacattttatagtactatctgtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 45356011  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  45356010 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 45355967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 25637649 - 25637888
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||| ||| ||| ||||||| ||||||| ||| | || | ||| |||||||||||||   || | |||||||| | |||||    
T  25637649 acacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaagcccgtgttactaaaga-atttt 25637747  T
Q  98 aattacattttattgtatttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntatt 197  Q
    | ||||||||||| |||||  ||||||| | ||||||||| | ||| || |||||||||||||||||||||||||||||||||||| |        | ||    
T  25637748 agttacattttatagtattattgtaacaattaaaaagtgttgcaaa-tgctacattattgtaacactttttgtatcactagtaacaat-actaaagtgtt 25637845  T
Q  198 acatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  25637846 acatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 25637888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 28249170 - 28248934
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||    
T  28249170 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 28249072  T
Q  98 aattacattttattgtatttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntatt 197  Q
    | ||||||||||| |||   |||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | ||    
T  28249071 agttacattttatagta---ctgtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgtt 28248977  T
Q  198 acatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  28248976 acatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 28248934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5651040 - 5650863
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||| ||||| ||||||||| ||||||||||| ||| ||| ||| | |||||||| |||||||||||||   || | |||| |||||| |||     
T  5651040 acacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaacccttgttacaaaaaagcttt- 5650942  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 175  Q
    | || |||||||| ||||| ||| ||||||||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  5650941 agttgcattttatggtattatctataacattcaaatagtgtcacaaaatgttacattattgtaacactttttgtatcac 5650863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6801925 - 6801679
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||| ||||| ||||||||  ||||||||||| ||||||| ||||| || ||||| |||||||||||||   |||| |||||||| || ||||    
T  6801925 acacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgttactaaagag-tttt 6801827  T
Q  98 aattacattttattgtattt-ctgtaacattcaaaaagtgt-----cgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnn 191  Q
    | ||||||||||  |||||  |||||||||| |||||||||     || ||||||||||||||||||||||||||||||||||  |||||| |           
T  6801826 agttacattttagagtattagctgtaacattaaaaaagtgtactgtcgcaaaatgttacattattgtaacactttttgtatcatcagtaac-cataaaga 6801728  T
Q  192 nntattacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
      | |||||||||| ||||||| ||| | ||||||||||||||||||||    
T  6801727 aatgttacatttatcatttttgcgaattagtaaaaagtgttgcaaaatt 6801679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 17634562 - 17634253
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaatt 101  Q
    ||||||||| | | ||||||||| ||||||||||| ||||||| || || || ||||| ||||| |||||||   || | |||||||| | |||| | ||    
T  17634562 ttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaagcccgtgttactaaagaaattt-agtt 17634464  T
Q  102 acattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattaca 200  Q
    ||||||||| ||| | ||||||||| ||||||||||||| ||| | |||||||||||||||||||| |||||||| | ||||| |        | || ||    
T  17634463 acattttatagtactatctgtaacaatcaaaaagtgtcgcaaa-tattacattattgtaacactttatgtatcaccaataacaataaataaa-tgttgca 17634366  T
Q  201 tttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctac-caaaaaatgttactaattataatagattagaa 299  Q
    ||||| ||||||||||||||||||||||||||||||||||||| || ||       ||| ||| |||  |||||||||||||||||  || ||| |||||    
T  17634365 tttatcatttttgagaagttgtaaaaagtgttgcaaaattatctagactaaaaaattgtaaatgtactaaaaaaatgttactaattggaaaagaatagaa 17634266  T
Q  300 aaagtggattatc 312  Q
    || ||||||||||    
T  17634265 aatgtggattatc 17634253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 25638812 - 25639052
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||    
T  25638812 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaaacccatgttactaaagtg-tttt 25638910  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | || |||||| ||||||| ||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  25638911 agttacattttatagtactatccgtaacaatcaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaag-tgt 25639008  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  25639009 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 25639052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 29345436 - 29345614
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||| ||||||| | | ||||||||| ||||| ||||| ||||||| ||||| | |||||| |||||||||||||   |||| |||||||| | | |||    
T  29345436 acactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaacaaacttt 29345535  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 175  Q
    | ||||||||||| ||||| | ||||||| ||| || |||| | ||||||||||||||||||||||||| |||||||||    
T  29345536 agttacattttatagtattatttgtaacaatcagaatgtgttgcaaaatgttacattattgtaacacttcttgtatcac 29345614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 18767053 - 18767163
Alignment:
Q  129 aaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttgagaagttgtaaaaag 228  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||| |        | |||||||||||||||||||||||||||||||||    
T  18767053 aaaaagtgtcataaa-tgttacattattgtaacattttttgtatcactagtaacaataaaaaaagtgttacatttataatttttgagaagttgtaaaaag 18767151  T
Q  229 tgttgcaaaatt 240  Q
    | ||||||||||    
T  18767152 tattgcaaaatt 18767163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 5528748 - 5528988
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || |  || ||||||||| |||   |  | |||||||| || ||||    
T  5528748 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagataaagtctgtgttactaaagag-tttt 5528846  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||  ||||| ||||||||| | ||||||||||| ||| | | |||||||||||||||||||||||||| |||||||| |        | |    
T  5528847 agttacattttacagtattatctgtaacagttaaaaagtgtcgcaaa-tataacattattgtaacactttttgtatcattagtaacaat-aaaaaagtgt 5528944  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||| |||||||||||||||||||||||||||||| ||||||||    
T  5528945 tacaattataatttttgagaagttgtaaaaagtgtcgcaaaatt 5528988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 337
Target Start/End: Original strand, 6223434 - 6223747
Alignment:
Q  29 aaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccc---tattactaaaaagattttaattacattttattgtatt-tctgtaac 124  Q
    |||| |||||||||||||| ||||| |||||| | |||||||||||||  |   | |||||||| || ||||| ||||| |||||  |||| | ||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagag-ttttagttacactttataatattatatgtaac 6223532  T
Q  125 attcaaaa-agtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttgagaagttgt- 222  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||        | |||||||| ||| |||||||||||| |     
T  6223533 attcaaaaaagtgtcgcaaaatgttacattattgtaacactttttgaatcaccagtaacact-aaaaaaatgttacattt-taaattttgagaagttata 6223630  T
Q  223 aaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctac-caaaaaatgttactaattataatagattag-aaaaagtggattatcaatagaag 320  Q
    ||||||||| |||||||| ||  | ||       |||||||||||  |||||||||||||||||  | |||||||| ||||||||||||||| || |       
T  6223631 aaaaagtgtcgcaaaattgtcttgcctaaaaaattgtgaatctacaaaaaaaatgttactaattgaagtagattagaaaaaagtggattatctattggta 6223730  T
Q  321 tttttgtagtcaatcca 337  Q
    |||||||| ||||||||    
T  6223731 tttttgtactcaatcca 6223747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 29118542 - 29118484
Alignment:
Q  117 tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 175  Q
    |||||||||||||||| |||| | |||||||||||| ||||||||||||||||||||||    
T  29118542 tctgtaacattcaaaacgtgttgcaaaatgttacatcattgtaacactttttgtatcac 29118484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 29345641 - 29345676
Alignment:
Q  205 taatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||| ||||||||    
T  29345641 taatttttgagaagttgtaaaaagtgtcgcaaaatt 29345676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 403
Target Start/End: Original strand, 5000975 - 5001089
Alignment:
Q  290 tagattagaaaaagtggattatcaatagaagttttt-gtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaat 388  Q
    ||||||| |||||| |||||||| |||| | ||||| || ||| || ||||||||||||| |||| || |||||| |  |||||||  ||||||| ||||    
T  5000975 tagattaaaaaaagcggattatctataggatttttttgttgtctattcaccacattgaatatagaaatcacataagtaattttacacaatccaaggaaat 5001074  T
Q  389 caaaatactacattt 403  Q
    || |||| |||||||    
T  5001075 cacaatagtacattt 5001089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 6403616 - 6403673
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||| ||| ||||||||||| ||||||| ||||| |||||||  |||||||||||||    
T  6403616 taaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 6403673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 12105561 - 12105605
Alignment:
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||| || |||||| |||||||||||||||||| ||||||||    
T  12105561 ttacattcatcattttttagaagttgtaaaaagtgtcgcaaaatt 12105605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 5e-69; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 95 - 404
Target Start/End: Original strand, 18308249 - 18308561
Alignment:
Q  95 tttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnn 193  Q
    |||| ||||||||||| ||||| | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||   |||||||            
T  18308249 tttagttacattttatagtattgtttgtaacattcaaaaagtgtcacaaaatgttacattattgtaacactttttgtatcaccgataacactagaaaaa- 18308347  T
Q  194 tattacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaa--tgttactaattataata 291  Q
    | ||||||||||||||||||||||||| |||||||||||||||| || ||  ||||       ||||||||||||||||||  |||||| ||||  ||||    
T  18308348 tgttacatttataatttttgagaagttataaaaagtgttgcaaagttgtcgtggctaaaatattgtgaatctaccaaaaaaaatgttaccaattgaaata 18308447  T
Q  292 gattagaaaa-agtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatca 390  Q
    | |||||||| ||||||||||| |||| || | ||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||    
T  18308448 gtttagaaaaaagtggattatctataggagctgttgtactcaatccaccacattgaatctagaaattacataagtgtttttacatgatccaaacaaatca 18308547  T
Q  391 aaatactacatttt 404  Q
    ||||||||||||||    
T  18308548 aaatactacatttt 18308561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 205 - 404
Target Start/End: Complemental strand, 39368030 - 39367828
Alignment:
Q  205 taatttttgagaagttgtaaaaa-gtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaa-tgttactaattataatagattagaaaaa 302  Q
    ||||||||||||||||||||||| |||| |||||||| ||||| ||       |||||||||| ||||||| |||||||||||  |||||||||||||||    
T  39368030 taatttttgagaagttgtaaaaaagtgtcgcaaaattgtccagactaaaaaattgtgaatctatcaaaaaaatgttactaattgaaatagattagaaaaa 39367931  T
Q  303 -gtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatcaaaatactacat 401  Q
     |||||||||| |||| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39367930 agtggattatctataggagtttttttactcaatccaccacattgaatctagagattacataagtgtttttacatgatccaagcaaatcaaaatactacat 39367831  T
Q  402 ttt 404  Q
    |||    
T  39367830 ttt 39367828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 28636926 - 28637091
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaattacattttattgtat 115  Q
    ||||||||| ||||||||||| ||| ||| ||||| ||||||||||||||||||||||   | || || ||||| |||||| | ||||||||||| |||     
T  28636926 taaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtcactgttgctaaagagattt-agttacattttatagtaa 28637024  T
Q  116 t-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaa 181  Q
    | |||   ||| ||||||||||||| | ||||||||||||||||||||||||||||||||| |||||    
T  28637025 tatctacgacaatcaaaaagtgtcgcacaatgttacattattgtaacactttttgtatcaccagtaa 28637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 51758762 - 51758942
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccct---attactaaaaagattttaatt 101  Q
    ||||||||| | | ||||||||| ||||||||| | ||||||| ||| | || | ||| |||| ||||||||  ||   ||||||||| || ||||| ||    
T  51758762 ttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattactaaagag-ttttagtt 51758860  T
Q  102 acattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
    ||||||||| ||||| ||||||||| | ||||||||| | ||| ||||||||||||||||||||||||||||||| |||||||    
T  51758861 acattttatagtattatctgtaacaattaaaaagtgttgcaaa-tgttacattattgtaacactttttgtatcaccagtaaca 51758942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 897464 - 897644
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac--cctattactaaaaagattttaatta 102  Q
    ||||||||| ||| ||||| ||| |||||||| || ||||||| ||||| || ||||| |||||||||||||   | | |||||||| || | | | |||    
T  897464 ttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaagttcatgttactaaagagctat-agtta 897562  T
Q  103 cattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
    ||||||||   ||| | ||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  897563 cattttatacaattatttgtaacattaaaaaattctcgcaaaatgttacattattgtaacactttttgtatcaccagtaaca 897644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 39368612 - 39368547
Alignment:
Q  120 gtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacact 185  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||    
T  39368612 gtaacatttaaaaagtgtcgcaaaatgttacattattgtaacactttttgtatcaccggtaacact 39368547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 403
Target Start/End: Complemental strand, 47694667 - 47694555
Alignment:
Q  290 tagattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatc 389  Q
    ||||||||||||||||||||||| |||| | ||||||| ||| ||||| |||||||||| |||| || |||||| |  |||||||  |||||||||||||    
T  47694667 tagattagaaaaagtggattatctataggattttttgttgtctatcca-cacattgaatatagaaatcacataagtaattttacacaatccaagcaaatc 47694569  T
Q  390 aaaatactacattt 403  Q
    | |||| |||||||    
T  47694568 acaatagtacattt 47694555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5911759 - 5911684
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||||||| | | ||||||||| ||||||||||||||||||| ||||| || ||||| |||||||||||||    
T  5911759 acacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaa 5911684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 349
Target Start/End: Original strand, 17113133 - 17113283
Alignment:
Q  200 atttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaa-aatgttactaattataatagattaga 298  Q
    ||||||||||| ||| |||||||||||||||| ||||| || || || ||       |||||||||| ||||| ||||||| | |||  |||| ||||||    
T  17113133 atttataatttgtgaaaagttgtaaaaagtgtcgcaaagttgtctagactaaaaaaatgtgaatctagcaaaaaaatgttattgattgaaatatattaga 17113232  T
Q  299 aaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatc 349  Q
    |||  ||||||||| |||| |||||||||  |||||| |||||||||||||    
T  17113233 aaacatggattatctataggagtttttgtgctcaatctaccacattgaatc 17113283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 16222787 - 16222858
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| | | ||||||||| ||||||||||| || |||| ||||| || |||||||||||||||||||    
T  16222787 ttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaa 16222858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 28637578 - 28637625
Alignment:
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaattatc 243  Q
    ||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  28637578 ttacattcataatttttgagtagttgtaaaaagtgtcgcaaaattatc 28637625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 3399645 - 3399702
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||| | ||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  3399645 taaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaa 3399702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 12189975 - 12190032
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| ||||| ||||| ||||||| ||||| |||||||| |||||||||||||    
T  12189975 taaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaa 12190032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 37097435 - 37097374
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaa 62  Q
    ||||||||||||| | | ||||||||| |||||||||||||| |||| ||||| ||||||||    
T  37097435 acacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaa 37097374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 1843985 - 1844032
Alignment:
Q  29 aaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||||||||| ||| ||||| |||||||| |||||||||||||    
T  1843985 aaaatgttactgattgaatttagtaacatttgaacaattgttaggtaa 1844032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 13208621 - 13208692
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| | ||||||| ||| ||||||||||| ||||||| ||||| || |||||  ||||||||||||    
T  13208621 ttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaa 13208692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 95 - 403
Target Start/End: Complemental strand, 37750989 - 37750679
Alignment:
Q  95 tttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnn 193  Q
    |||| ||||||||||| ||||| ||| || |||||||||| ||||| ||| |||||||||||||||||||||||||||||||  |   ||||            
T  37750989 tttagttacattttatagtattatctata-cattcaaaaaatgtcgcaaa-tgttacattattgtaacactttttgtatcaccgg---cactcaaaaaa- 37750896  T
Q  194 tattacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataat--- 290  Q
    |||||||||||||||||||||||||||||||||||| | |||||||| |  || ||       ||| ||||||||||||||||||||||||||||||       
T  37750895 tattacatttataatttttgagaagttgtaaaaagtatcgcaaaattgtatagactaaaaaattgtaaatctaccaaaaaatgttactaattataattga 37750796  T
Q  291 ---agattagaaaaa-gtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaa 386  Q
       |||||||||||| |||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||    
T  37750795 aatagattagaaaaaagtggattatctataggagtttttgtactcaatccaccacattgaatctaaagattacataagtgtttttacatgatccaaacaa 37750696  T
Q  387 atcaaaatactacattt 403  Q
     ||||||||||||||||    
T  37750695 ttcaaaatactacattt 37750679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1685047 - 1684807
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || ||||    
T  1685047 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-tttt 1684949  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||| ||||| ||||| ||||||||| | ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| |        | |    
T  1684948 agttacaatttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacaatattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 1684851  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  1684850 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 1684807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43600272 - 43600512
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| |  | ||||| |||||||||||||   || | ||||||||  | ||||    
T  43600272 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 43600370  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  43600371 agttacattttatagtactatctgtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 43600468  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  43600469 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 43600512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1152049 - 1152289
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||| ||| ||||||||||| ||||||| | | | || |  || ||||||||| |||   || | |||||||| || ||||    
T  1152049 acacttgaaaattgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttagataaagtccgtgttactaaagag-tttt 1152147  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||| |||||  |||| ||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||||||||| |        | |    
T  1152148 agttacagtttataatattatctgtaacaattaaaaagtgtc-tcaaatgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 1152245  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  1152246 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 1152289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47066129 - 47065889
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||| | ||||||| ||||| ||  |||| |||||||||||||   || | |||| ||| || ||||    
T  47066129 acacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaagcccgtgttaccaaagag-tttt 47066031  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | || |||||| ||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||| |        | |    
T  47066030 agttacattttatagtactatccgtaacaatcaaaaagtgtcgcaaa-tgttacactattgtaacactttttgtataactagtaacaat-aaaaaagtgt 47065933  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||    
T  47065932 tacatttataaattttaagaagttgtaaaaagtgtggcaaaatt 47065889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 53300356 - 53300599
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | ||||||||||| ||||||||| | ||||||| ||||| ||  | || |||||||||||||   || | |||| ||| || ||||    
T  53300356 acacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaagcccgtgttaccaaagag-tttt 53300454  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacat---tattgtaacactttttgtatcactagtaacactnnnnnnnn 193  Q
    | ||||||||||| ||| | || |||||| ||||||||||||| ||| |||||||    |||||||||||||||||||| |||||||||| |            
T  53300455 agttacattttatcgtactatccgtaacaatcaaaaagtgtcgcaaa-tgttacaacactattgtaacactttttgtataactagtaacaataaaaaag- 53300552  T
Q  194 tattacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    | |||||||||||| |||| |||||||||||||||||| ||||||||    
T  53300553 tgttacatttataaattttaagaagttgtaaaaagtgtggcaaaatt 53300599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 27739774 - 27739625
Alignment:
Q  95 tttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaa-tgttacattattgtaacactttttgtatcactagtaacactnnnnnnn 192  Q
    |||| ||||||||||| ||||| ||||||| | ||||||||||||| |||| | |||||||||||||||| ||||||||||| || ||||| |           
T  27739774 tttagttacattttatagtattatctgtaagaatcaaaaagtgtcgaaaaacttttacattattgtaacattttttgtatcaatactaacaat-aaaaaa 27739676  T
Q  193 ntattacatttataatttttgagaagttgtaaaaagtgttgcaaaattatc 243  Q
     | |||||||||||||||||||| |||||||||||||||  ||||||||||    
T  27739675 atgttacatttataatttttgaggagttgtaaaaagtgtcacaaaattatc 27739625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4881164 - 4881089
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||  ||||| |||||||||||||||    
T  4881164 acacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaa 4881089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 4904235 - 4904160
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    |||||| |||||| ||| ||||||| | ||||||||||||||||||| ||||| |||||| | |||||||||||||    
T  4904235 acacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaa 4904160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 21539348 - 21539191
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa--ccctattactaaaaagattttaattacattttattgtatt 116  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| || ||||||||| |||  || | |||||||| ||| |||| ||||||||| | |||||    
T  21539348 taaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtccttgttactaaagaga-tttagttacattttttagtatt 21539250  T
Q  117 tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 175  Q
       |||||| | | ||| | ||| ||||||| | ||||||||||||| ||||| |||||    
T  21539249 atcgtaacaataagaaaatatcgcaaaatgtaatattattgtaacaccttttgcatcac 21539191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 21317772 - 21317833
Alignment:
Q  290 tagattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatcta 351  Q
    |||||||||||| |||||||||  ||||  ||||||||||||||||||||||| ||||||||    
T  21317772 tagattagaaaaggtggattatgtataggtgtttttgtagtcaatccaccacactgaatcta 21317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 24558901 - 24558807
Alignment:
Q  257 tgtgaatctaccaaaaaa---tgttactaattataatagattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatcta 351  Q
    ||||||||||||||||||   |||||||||||  ||||||||||||||||||||||   | ||  |||||||||| |||||||||| | |||||||||    
T  24558901 tgtgaatctaccaaaaaaaaatgttactaattgaaatagattagaaaaagtggatt---actatgagtttttgtactcaatccaccgccttgaatcta 24558807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 24559072 - 24559014
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac 77  Q
    ||||||||| ||||||||||| ||||||| ||||| ||||||||  |||||||||||||    
T  24559072 taaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaac 24559014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 48464049 - 48464118
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggt 74  Q
    ||||||||| ||| ||||| ||  ||||||||||| ||||||| ||||| |||||||| |||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 199 - 377
Target Start/End: Complemental strand, 38449875 - 38449696
Alignment:
Q  199 catttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataatagattaga 298  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||       |||||||||||||||| ||||||||||||  |||||||||||    
T  38449875 catttataatttttgagaagttgtaaaaagtgtcgcaaaattgtccaggctaaaagattgtgaatctaccaaaacatgttactaattgaaatagattaga 38449776  T
Q  299 aaaa-gtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatga 377  Q
    |||| |||||||||| |||| |||||||||| |||||| ||||||||||||||||| ||||||||| |||||||||||||    
T  38449775 aaaaagtggattatctataggagtttttgtactcaatctaccacattgaatctagatattacataagtgtttttacatga 38449696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 17037548 - 17037787
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||  | | ||||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||   |  | |||||||| || ||||    
T  17037548 acacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtcagtgttactaaagag-tttt 17037646  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||||| ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |    
T  17037647 agttacattttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat--aaaaagtgt 17037743  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||| ||||||||  |||||||| ||||||||    
T  17037744 tacatttataatttttaagaagttgacaaaagtgtcgcaaaatt 17037787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 31571034 - 31571424
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaat----aattgttaggtaa---ccctattactaaaaaga 93  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||  ||||| ||| |  ||    |||||||||||||   || | |||||||| ||     
T  31571034 acacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaattgttaggtaaaacccatgttactaaagagc 31571133  T
Q  94 ttttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactag-taacactnnnnnn 191  Q
    |||  ||  |||| ||| ||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||  |||| ||  | |||||||          
T  31571134 tttagatc-cattatatagtattatcggtaacattcaaaaaatgtcgcaaaatgttacattattgtaacactttccgtattaccgggtaacactaaaaaa 31571232  T
Q  192 nntattacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataata 291  Q
       ||||| |||||||||||| |||||||||||||||||| |||||||| ||||||||                   |||||||||||||| ||  ||||    
T  31571233 ac-attacttttataatttttaagaagttgtaaaaagtgtcgcaaaattgtccaggcta------------------aaaaaatgttactatttgaaata 31571313  T
Q  292 gattagaaaaa-gtggattatcaa-tagaagtttttgtagtcaatccaccacattgaatctagagattacataattgtttttacatgatccaagcaaatc 389  Q
    ||||||||||| |||||||||| | ||||  |||||||| |||||||||||||||||||||||| ||||||||| ||    ||||||||||||||||| |    
T  31571314 gattagaaaaaagtggattatctactagagttttttgtactcaatccaccacattgaatctagaaattacataagtg----tacatgatccaagcaaagc 31571409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 19985018 - 19985177
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaattacattttattgtat 115  Q
    ||||||||| ||||||||||| |||| || ||||| ||||||||||||||||||||||   ||   |||||||| || ||||| ||||||||||| ||||    
T  19985018 taaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagag-ttttagttacattttatagtat 19985116  T
Q  116 t-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 175  Q
    | | ||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19985117 tatatgtaataatcaaaaagtgttgcaaaatgttacattattgtaacactttttgtatcac 19985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 12042268 - 12042099
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac----cctattactaaaaagattttaat 100  Q
    ||||||||| | | ||||||||| ||||||||||||||| ||| ||||| |||||||| |||||||||||||     |||||||||||| || ||||| |    
T  12042268 ttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaagaaacctattactaaagag-ttttagt 12042170  T
Q  101 tacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgt 170  Q
    ||||||||||  |||| | ||||| | | ||||||||||| |||||| |||||||||||||||||||||||    
T  12042169 tacattttatattattatttgtaataataaaaaagtgtcgcaaaatgatacattattgtaacactttttgt 12042099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5079159 - 5078920
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||    
T  5079159 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 5079061  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||| | ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  5079060 agttacattttatagtactatctgtaacaatcaaaaagtgttgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 5078963  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  5078962 tacatttataa-ttttgaggagttgtaaaaagtgtcgcaaaatt 5078920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 23616778 - 23616660
Alignment:
Q  129 aaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttgagaagttgtaaaaag 228  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |||||||||||||||||||||||||||||||||    
T  23616778 aaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgttacatttataatttttgagaagttgtaaaaag 23616681  T
Q  229 tgttgcaaaattatccaggct 249  Q
    ||| |||||||| || |||||    
T  23616680 tgtcgcaaaattgtctaggct 23616660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 23848175 - 23848057
Alignment:
Q  129 aaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttgagaagttgtaaaaag 228  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |||||||||||||||||||||||||||||||||    
T  23848175 aaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgttacatttataatttttgagaagttgtaaaaag 23848078  T
Q  229 tgttgcaaaattatccaggct 249  Q
    ||| |||||||| || |||||    
T  23848077 tgtcgcaaaattgtctaggct 23848057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 30786272 - 30786441
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | | ||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||   || | |||||||||||| |||    
T  30786272 acacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaaga-ttt 30786370  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacacttttt 168  Q
    | | |||||||||  |||| | ||||||| | ||||||||||| |||||  | |||||||||||||||||||    
T  30786371 agtcacattttatgttattatttgtaacaataaaaaagtgtcgcaaaat-atccattattgtaacacttttt 30786441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 257 - 403
Target Start/End: Original strand, 10869918 - 10870068
Alignment:
Q  257 tgtgaatctaccaaaaaat-gttactaattataat-agattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagag 354  Q
    ||||||||||||||||||| |||| | |||  ||| |||||||| |||  |||||||| |||| ||||||||||||| |||||||||||||||||||||     
T  10869918 tgtgaatctaccaaaaaattgttattgattgaaattagattagagaaac-ggattatctataggagtttttgtagtctatccaccacattgaatctagaa 10870016  T
Q  355 attacataat---tgtttttacatgatccaagcaaatcaaaatactacattt 403  Q
    || ||||||    | ||||||||  |||||||||||||| |||| |||||||    
T  10870017 atcacataacaagtatttttacacaatccaagcaaatcacaatagtacattt 10870068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 7410847 - 7411013
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaattacattttattgtat 115  Q
    ||||||||  ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||| ||||||||||| |||     
T  7410847 taaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-ttttagttacattttatagtac 7410945  T
Q  116 t-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
      | ||||||| ||||||||||| | ||| || ||| ||||||||||||||||||||||||| ||||||    
T  7410946 aatttgtaacaatcaaaaagtgttgcaaa-tggtaccttattgtaacactttttgtatcacttgtaaca 7411013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 7411534 - 7411578
Alignment:
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  7411534 ttacatttataatttttgaggagttgtaaaaagtgttgtaaaatt 7411578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9333637 - 9333581
Alignment:
Q  20 aaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    |||||||| ||||||||||| ||||||| ||||| |||||||  |||||||||||||    
T  9333637 aaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 9333581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 31069057 - 31068983
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    |||||| |||||| | | ||||||||| ||||||||||| ||||||| ||||| || ||||| |||||||||||||    
T  31069057 acacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggtaa 31068983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10869460 - 10869516
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggta 75  Q
    ||||||| | ||| ||||||| ||||||| ||||| |||||||| ||||||||||||    
T  10869460 taaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 10869817 - 10869845
Alignment:
Q  155 ttgtaacactttttgtatcactagtaaca 183  Q
    |||||||||||||||||||||||||||||    
T  10869817 ttgtaacactttttgtatcactagtaaca 10869845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 26621186 - 26620785
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| ||| ||||| ||| ||||||||||||||||||| ||| | ||||| || ||||||||| |||   || | |||||||| || |||     
T  26621186 acacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagagcttt- 26621088  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||   |||||||        | |    
T  26621087 agttacattttatagtattatctgtaacattcaaaaagtgtcataaaatgttacattattgcaacacttgttgtatcaccgataacact-aaaaaaatgt 26620989  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataatagatta 296  Q
    |||||| ||||||||| ||||||    |||| |||||||||||| || || |        | |||| ||||||||||||||||||||||  |||||||||    
T  26620988 tacattcataattttttagaagt----aaaaatgttgcaaaattgtctagacacaaaaattatgaacctaccaaaaaatgttactaattgaaatagatta 26620893  T
Q  297 g-aaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacat---aattgtttttacatgatccaagcaaatcaaa 392  Q
    | ||||||||  ||||| |||  ||| ||| || |||| ||||||| ||||||||||| || ||||   || ||||||||||||||||||| ||| ||||    
T  26620892 gaaaaaagtgttttatctataacagtgtttttactcaacccaccactttgaatctagaaatcacataacaagtgtttttacatgatccaaggaaaccaaa 26620793  T
Q  393 atactaca 400  Q
    ||||||||    
T  26620792 atactaca 26620785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 400
Target Start/End: Complemental strand, 26619190 - 26618795
Alignment:
Q  9 aaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac-cctat--tactaaaaagattttaattacat 105  Q
    ||||| ||| ||||||||| ||||||||||||||||||| || || |||||||| |||||| ||||||  |||||  ||||||| | | |||| ||||||    
T  26619190 aaattgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattgt-aggtaaatcctatgttactaaaga-actttagttacat 26619093  T
Q  106 tttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacattta 204  Q
    || || ||||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||   |||||||        | |||||||||    
T  26619092 ttgatagtattatttgtaacattcaaaaagtgtcgcaaaatgctacattattgtaacactttttgtatcaccgataacactaaaaataatgttacattta 26618993  T
Q  205 taatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctaccaaaaaatgttactaattataatagattag-aaaaag 303  Q
    ||||||||| |||   ||||||| ||| |||||||| || || |        ||| || ||||||||||||||||||||||  |||||||||| ||||||    
T  26618992 taatttttgggaa---gtaaaaaatgtcgcaaaattgtctagacaaaaaaattgtaaacctaccaaaaaatgttactaattgaaatagattagaaaaaag 26618896  T
Q  304 tggattatcaataga--agtttttgtagtcaatccaccacattgaatctagagattacat---aattgtttttacatgatccaagcaaatcaaaatacta 398  Q
    |   ||||  ||| |  ||||| | || || ||||||||||||||||||||| |||||||   || ||||||| ||| ||||||||||||||||||||||    
T  26618895 taatttatatatatatcagtttat-tactctatccaccacattgaatctagaaattacataacaagtgttttttcattatccaagcaaatcaaaatacta 26618797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9242579 - 9242339
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||| ||||||| ||||||| | ||| || ||||| ||||||||| |||   || | |||||||| || ||||    
T  9242579 acacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaagtccatgttactaaagag-tttt 9242481  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||||| ||| ||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||| |        | |    
T  9242480 agttacattttatagtattatctataacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactattaacaat-gaaaaagtgt 9242383  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  9242382 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 9242339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4685498 - 4685258
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||| | ||||||| ||| | || ||||| |||||||||||||   || ||||||||||  | ||||    
T  4685498 acacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaagtg-tttt 4685400  T
Q  98 aattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| |||||||||||||  ||||| ||| ||||||||||||||||||||||||| |||||| |        | |    
T  4685399 agttacattttatagtactatctgtaacaatcaaaaagtgtcg-caaatggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 4685302  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  4685301 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 4685258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 26608630 - 26608464
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaatt 101  Q
    ||||||||| |||| |||||||| ||||||||||||||||||| ||||| |||||||| ||||||||| |||   || | |||||||| ||  |||| ||    
T  26608630 ttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagag-ctttagtt 26608532  T
Q  102 acattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacacttttt 168  Q
     |||||||| ||| | ||| ||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  26608531 gcattttatagtactatctataacaatcaaaaagtgtcgcaaaatgttacattattgtaagacttttt 26608464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 3374523 - 3374644
Alignment:
Q  119 tgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttgagaag 218  Q
    ||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||| ||||||| |        | ||||||||||||||||| |||||    
T  3374523 tgtaacattcaaaaagtatcgcaaaatatcacattattgtaacactttttgtatcaccagtaacaat-aaaaaagtgttacatttataattttttagaag 3374621  T
Q  219 ttgtaaa-aagtgttgcaaaatt 240  Q
    ||||||| |||||||||||||||    
T  3374622 ttgtaaagaagtgttgcaaaatt 3374644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 288 - 400
Target Start/End: Complemental strand, 26608370 - 26608253
Alignment:
Q  288 aatagattagaaaaa--gtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacat---aattgtttttacatgatccaa 382  Q
    |||||||||||||||  |||  ||||| |||| ||||||| || |||||||||||||||||||||| | |||||||   || || |||||||||||||||    
T  26608370 aatagattagaaaaaaagtgttttatctatagcagtttttttactcaatccaccacattgaatctaaaaattacataacaagtgattttacatgatccaa 26608271  T
Q  383 gcaaatcaaaatactaca 400  Q
    ||||||||||||||||||    
T  26608270 gcaaatcaaaatactaca 26608253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 30089740 - 30089880
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||| | ||| ||||||||| |||||||||||||||| || ||||| |||||||| |||||||||| ||   || | |||||||| ||  |||    
T  30089740 acacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagag-cttt 30089838  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtc 138  Q
    | ||||||||||| ||||| | | ||||||||||||||||||    
T  30089839 agttacattttatagtattatttttaacattcaaaaagtgtc 30089880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 8241733 - 8241787
Alignment:
Q  129 aaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
    |||||||| ||||| |||||| |||||||||||||||||||||||||||||||||    
T  8241733 aaaaagtgccgtaatatgttagattattgtaacactttttgtatcactagtaaca 8241787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20277455 - 20277213
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaac---cctattactaaaaagatttt 97  Q
    ||||| ||||||| | | ||||||||  ||||| ||| | ||||||| ||||| ||||| || |||||||||||||    ||| |||||||| || |||     
T  20277455 acactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagagcttt- 20277357  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaag-tgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnnta 195  Q
    | ||||||| ||| ||||| ||||||||| | |||||  ||| | ||||||||| ||||||| ||||||||||||||||| | ||||  |        |     
T  20277356 agttacattatatagtattatctgtaacaataaaaaaaatgtagcaaaatgttatattattgaaacactttttgtatcaccaataacgataaaaaaa-tg 20277258  T
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||||||||||||||||||||||| | ||||||    
T  20277257 ttacatttataatttttgagaagttgtaaaaagtgtcgtaaaatt 20277213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 19746823 - 19746867
Alignment:
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  19746823 ttacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 19746867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26205510 - 26205435
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||||||||| | ||||||||| ||||||||||| ||||||| ||||| || ||||| ||||| |||||||    
T  26205510 acacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaa 26205435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 26225073 - 26224998
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||||||| | | ||||||||| |||||| |||| ||||||| ||||| || ||||| |||| ||||||||    
T  26225073 acacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaa 26224998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 16086501 - 16086567
Alignment:
Q  10 aattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    |||| |||||||||||   ||| ||||||| ||||||| || || ||||||||||||||||||||||    
T  16086501 aattgttattaaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaa 16086567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 14669441 - 14669198
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| | | | || | |||||||||||||||||   || | |||||||| || ||||    
T  14669441 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggtaaagtccgtgttactaaagag-tttt 14669343  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||||| | ||||||| | ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||| |        | |    
T  14669342 agttacattttatagtattatttgtaacaattaaaaagtgtcacaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 14669245  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaattatc 243  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14669244 tacatttataatttttgagaagtcgtaaaaagtgtcgcaaaattatc 14669198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 17719818 - 17719578
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||| | | | | || | ||| ||||||||| |||   || | |||||||| || ||||    
T  17719818 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagataaagtccgtgttactaaagag-tttt 17719720  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||| ||||| ||||| ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |        | |    
T  17719719 agttacaatttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtaacaat-aaaaaagtgt 17719622  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  17719621 tacatttataatttttgagaagttgtaaaaagtgtcgcaaaatt 17719578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 16734810 - 16735050
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | |||||||| |||||||||||||   || | ||||||||  | ||||    
T  16734810 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 16734908  T
Q  98 aattacattttattgta-tttctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||| |||  ||||| ||| ||||||||||||||| ||||||||| |||||| |        | |    
T  16734909 agttacattttatagtactatctgtaacaatcaaaaagtatcg-caaatggtaccttattgtaacactttctgtatcacttgtaacaat-aaaaaagtgt 16735006  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  16735007 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 16735050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 12591838 - 12592075
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||| | ||||||| ||||| |  | ||| |||||||||||||   || | |||||||| || ||||    
T  12591838 acacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccgtgttactaaagag-tttt 12591936  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||| ||||| ||||| ||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| |        | |    
T  12591937 agttacaatttatagtattatctgtaacaattaaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcactagtcacaat-aaaaaagtgt 12592034  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaa 237  Q
    |||  |||||||||||||||||||||||||||||| |||||    
T  12592035 tactattataatttttgagaagttgtaaaaagtgtcgcaaa 12592075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11936862 - 11936622
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| ||||||||| |||   || | ||||||||  | ||||    
T  11936862 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg-tttt 11936764  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| | ||||| ||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  11936763 agttacattttatagtactatctgtaacaataaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaag-tgt 11936666  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  11936665 tacatttataatttttgaggagttgtaaaaagtgttgcaaaatt 11936622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15361720 - 15361960
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccc---tattactaaaaagatttt 97  Q
    |||||| |||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||  |   | ||||||||| | ||||    
T  15361720 acacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatg-tttt 15361818  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||| | ||| || ||| ||||||||| ||||||||||||||| |||||| |        | |    
T  15361819 agttacattttatagtactatctgtaacaatcaaaaagtgttgcaaa-tggtaccttattgtaaaactttttgtatcacttgtaacaataaaaaag-tgt 15361916  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  15361917 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 15361960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 11948824 - 11948602
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaattacattttattgtat 115  Q
    ||||||||| ||||||||||| ||||||| ||| | || ||||| ||||||||| |||   || | ||||||||  | ||||| ||||||||||| |||     
T  11948824 taaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtg-ttttagttacattttatagtac 11948726  T
Q  116 t-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttga 214  Q
    | ||||||||| | ||||| ||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |||||||||||||||||||    
T  11948725 tatctgtaacaataaaaaaatgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaataaaaaag-tgttacatttataatttttga 11948628  T
Q  215 gaagttgtaaaaagtgttgcaaaatt 240  Q
    | ||||||||||||||||||||||||    
T  11948627 ggagttgtaaaaagtgttgcaaaatt 11948602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 30129496 - 30129391
Alignment:
Q  288 aatagattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagattacat---aattgtttttacatgatccaagc 384  Q
    ||||||||| ||||||||||||||| |||   |||||||||||||||||| ||||||||||||||| || ||||   || | ||||||||  ||||||||    
T  30129496 aatagattaaaaaaagtggattatctataagtgtttttgtagtcaatccatcacattgaatctagaaatcacatcacaagtatttttacaaaatccaagc 30129397  T
Q  385 aaatca 390  Q
    ||||||    
T  30129396 aaatca 30129391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 6684236 - 6684345
Alignment:
Q  129 aaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattacatttataatttttgagaagttgtaaaaag 228  Q
    ||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||| |        | |||| ||||||| ||||||||||||||||||||    
T  6684236 aaaaagtgtcgcaaa-tgttatattattgtaacacttcttgtatcactagtaacaat-aaaatagtgttacgtttataaattttgagaagttgtaaaaag 6684333  T
Q  229 tgttgcaaaatt 240  Q
    ||| ||||||||    
T  6684334 tgtcgcaaaatt 6684345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 183
Target Start/End: Original strand, 10070754 - 10070843
Alignment:
Q  94 ttttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
    ||||| ||||||||||| ||||| | ||||||| |  |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||    
T  10070754 ttttagttacattttatagtattatttgtaacaatttaaaagtgtcgcaaa-tgttacattattgtaacactttttgtatcattagtaaca 10070843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 23904447 - 23904270
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    |||||||||||||  || ||||| ||| |||| |||||| | | ||| ||||| |||||||| |||||||||||||   |||| |||| ||| || |||     
T  23904447 acacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaagcccctcttacaaaagaggttt- 23904349  T
Q  98 aattacattttattgtatt-tctgt-aacattcaaaaagtgtcgtaaaatgtta-cattattgtaacactttttgtatca 174  Q
     |||||| ||||| ||||| ||| | |||||||||||||||||  || |||| | |||||||||||||||||||||||||    
T  23904348 -attacactttatagtattatctcttaacattcaaaaagtgtcacaagatgtaaacattattgtaacactttttgtatca 23904270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 1942670 - 1942750
Alignment:
Q  95 tttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatca 174  Q
    |||| ||||||||||| ||||| ||||||||| | ||||  ||||| ||||||||||||||||||||||  ||||||||||    
T  1942670 tttagttacattttatagtattatctgtaacaattaaaatatgtcgcaaaatgttacattattgtaacatcttttgtatca 1942750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 23264587 - 23264516
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| ||| ||||||||| ||| ||||||| ||||||| ||||| |||| ||| |||||||||||||    
T  23264587 ttgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaa 23264516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 34375092 - 34375146
Alignment:
Q  257 tgtgaatctaccaaaaaa-tgttactaattataatagattagaaaaagtggatta 310  Q
    |||||||||||||||||| | |||||||||| ||||||||| |||||||||||||    
T  34375092 tgtgaatctaccaaaaaaatattactaattacaatagattaaaaaaagtggatta 34375146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 4485642 - 4485585
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| |||||| |||| ||||||| |||||  |||||||||||||||||||||    
T  4485642 taaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaa 4485585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9631250 - 9631178
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttagg 73  Q
    ||||||||||| ||||| ||||||||| | || |||||| | ||||| ||||| |||||||| ||||||||||    
T  9631250 acacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttagg 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 10935869 - 10935801
Alignment:
Q  8 aaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    |||| ||||| ||||||| | ||||||||||| |||| ||| |||| |||||||| |||||||||||||    
T  10935869 aaaaatattactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaa 10935801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 29667982 - 29667935
Alignment:
Q  29 aaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  29667982 aaaatgttactaattaaatttagtaacatttgaacaattgttaggtaa 29667935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 4591159 - 4591200
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaa 46  Q
    ||||||||||||| ||||||||| |||||||||| |||||||    
T  4591159 ttgaaaattattactaaatcaagaaaaatgttaccgattaaa 4591200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 30129583 - 30129551
Alignment:
Q  198 acatttataatttttgagaagttgtaaaaagtg 230  Q
    ||||||||||||||||||| |||||||||||||    
T  30129583 acatttataatttttgagacgttgtaaaaagtg 30129551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13845997 - 13846237
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||    
T  13845997 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 13846095  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  13846096 agttacattttatagtactatctgtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 13846193  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  13846194 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 13846237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 1628042 - 1627798
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||| ||||| ||||||| ||||| || ||||| |||||||| ||||   || | |||| ||| || ||||    
T  1628042 acacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgtgttacaaaagag-tttt 1627944  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattatt-gtaacactttttgtatcactagtaacactnnnnnnnnta 195  Q
    | ||||||||||| ||||| | ||||||| | ||||||||||| ||| |||||||||||| |||| ||||||| |||||||||||||| |        |     
T  1627943 agttacattttatagtattatatgtaacaattaaaaagtgtcgcaaa-tgttacattatttgtaatactttttatatcactagtaacaataaaaaag-tg 1627846  T
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaattatc 243  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  1627845 ttacatttataattttttagaagttgtaaaaagtgtcgcaaaattatc 1627798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2550171 - 2550411
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccc---tattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||  |   | ||||||||  | ||||    
T  2550171 acacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaagtg-tttt 2550269  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | | ||||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  2550270 agttacattttatagtactatttgtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 2550367  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  2550368 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 2550411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 27259536 - 27259372
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccctattactaaaaagattttaattaca 104  Q
    ||||||| ||||| ||||||||| ||||||||||| ||||||| ||||| |||||||| ||||      |  |  | |||||||| || ||| | |||||    
T  27259536 ttgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt------tccctttgttactaaagagcttt-agttaca 27259444  T
Q  105 ttttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 175  Q
    |||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27259443 ttttagagtattatctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcac 27259372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 94 - 240
Target Start/End: Original strand, 28745075 - 28745220
Alignment:
Q  94 ttttaattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnn 192  Q
    ||||| ||||||||||  ||||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||| |           
T  28745075 ttttagttacattttagagtattatttgtaacattcaaaaagtgtcgcaaaattttacattattgtaacactttttgtatcatcagtaacaat--aaaaa 28745172  T
Q  193 ntattacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
     | |||||||||| ||||||||||| ||||||||||||||||||||||    
T  28745173 atgttacatttatcatttttgagaatttgtaaaaagtgttgcaaaatt 28745220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 2943309 - 2943126
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    |||||||||| || | ||||||||||| ||||||||||| ||||||| ||||| |||| ||| ||||||||||| |   || | ||||||||  | ||||    
T  2943309 acacttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtg-tttt 2943211  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
    | ||||||||||| ||||| ||||||||| | ||||||||||| ||  ||||||| |||||||||||||||||||||||| ||||||    
T  2943210 agttacattttatagtattatctgtaacaattaaaaagtgtcgcaa--tgttacactattgtaacactttttgtatcactggtaaca 2943126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7407849 - 7407609
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||||| ||||| ||||||| ||| | || ||||| |||||||||||||   || | ||||||||  | ||||    
T  7407849 acacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaagcccgtgttactaaagtg-tttt 7407751  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | || |||||| ||||||||||||| ||| || ||| ||||||||||||||||||||||||| |||||| |        | |    
T  7407750 agttacattttatagtactatcagtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacactttttgtatcacttgtaacaat-aaaaaagtgt 7407653  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||| || ||||||||||||||| ||||||||    
T  7407652 tacatttataatttttaaggagttgtaaaaagtgtcgcaaaatt 7407609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 403
Target Start/End: Original strand, 35083229 - 35083378
Alignment:
Q  257 tgtgaatctaccaaaaaatgttactaattataatagattagaaaaagtggattatcaatagaagtttttgtagtcaatccaccacattgaatctagagat 356  Q
    ||||||||||||||||||||||||| ||   ||||||| ||||||| ||||||||  |||  |||||||||| |||||||||||||||||||||||| ||    
T  35083229 tgtgaatctaccaaaaaatgttactgatcgaaatagataagaaaaaatggattatgtataagagtttttgtactcaatccaccacattgaatctagaaat 35083328  T
Q  357 tacata---attgtttttacatgatccaagcaaatcaaaatactacattt 403  Q
     |||||   | || |||||||| || |||| |||||| ||||||| ||||    
T  35083329 cacataacgagtgcttttacataattcaagtaaatcacaatactaaattt 35083378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 240
Target Start/End: Original strand, 1654585 - 1654821
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccc---tattactaaaaagattttaatt 101  Q
    ||||||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||| ||||  |   | ||| ||||  | ||||| ||    
T  1654585 ttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaagcctgtgttattaaagtg-ttttagtt 1654683  T
Q  102 acattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntattaca 200  Q
    ||||||||| ||| | ||||||||| ||||||||||||| ||| || ||| ||||||||||| ||||||||||||| |||||| |        | |||||    
T  1654684 acattttatagtactatctgtaacaatcaaaaagtgtcgcaaa-tggtaccttattgtaacattttttgtatcacttgtaacaat-aaaaaagtgttaca 1654781  T
Q  201 tttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  1654782 tttataatttttgaggagttgtaaaaagtgtcgcaaaatt 1654821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 403
Target Start/End: Complemental strand, 25338896 - 25338686
Alignment:
Q  199 catttataatttttgagaagttgtaaaaagtgttgcaaaattatccaggctnnnnnnntgtgaatctac-caaaaaatgttactaattataatagattag 297  Q
    ||||||| |||||||||||||||||||||||||  |||||||||| |||||       | |||||||||  ||||||||||| | |||  |||||| |||    
T  25338896 catttatcatttttgagaagttgtaaaaagtgtctcaaaattatctaggcttaaaaattatgaatctactaaaaaaatgttattgattggaatagaatag 25338797  T
Q  298 aaaaagtggattatcaataga----agtttttgtagtcaatccaccacattgaatctagagattacataa-ttgtttttacatgatccaagcaaatcaaa 392  Q
    |||| || ||||||  ||| |    |||||||||| | |||||||| |||| |||||||| || ||||||   || ||||||| |||||||||||||| |    
T  25338796 aaaatgtagattatttatatataagagtttttgtactaaatccaccgcattaaatctagaaatcacataacaagtctttacataatccaagcaaatcaca 25338697  T
Q  393 atactacattt 403  Q
    |||||| ||||    
T  25338696 atactatattt 25338686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9633537 - 9633387
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||| ||||| |||||| |  ||||||||||| ||||||| ||||  ||||| || |||||||||||||   |||| |||||||| || ||||    
T  9633537 acacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaagag-tttt 9633439  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgtt 148  Q
    | ||||||||||  | ||| | ||||||||||||||| ||||| ||||||||    
T  9633438 agttacattttagagcattatatgtaacattcaaaaaatgtcgcaaaatgtt 9633387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 174
Target Start/End: Original strand, 2179960 - 2180108
Alignment:
Q  29 aaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaattacattttattgtatt-tctgtaac 124  Q
    ||||||||| ||||||||| ||| |||||||||| |||| || |||||   |||| |||||||| || ||| | ||| ||||||| || || ||| ||||    
T  2179960 aaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaagagcttt-agttatattttatagtgttatctttaac 2180058  T
Q  125 attcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatca 174  Q
    ||||||||    | |||||||||||| |||||||||||||||||||||||    
T  2180059 attcaaaattactagtaaaatgttacgttattgtaacactttttgtatca 2180108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 26707868 - 26707939
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||  ||| ||||||||| ||||||||||| ||||||| ||||| |||||||| |||||||||||||    
T  26707868 ttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaa 26707939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 36035571 - 36035656
Alignment:
Q  101 tacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacact 185  Q
    |||||||||| ||||| | ||||||||| ||||| |||| |||||||||||||||||||||||  ||||| |||||  ||||||||    
T  36035571 tacattttatagtattatatgtaacatttaaaaattgtcataaaatgttacattattgtaacatcttttggatcaccggtaacact 36035656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 16457422 - 16457351
Alignment:
Q  5 ttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| | | ||||||||| ||||||||||| ||||||| ||||| |||||||  |||||||||||||    
T  16457422 ttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaa 16457351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 35083129 - 35083171
Alignment:
Q  141 aaaatgttacattattgtaacactttttgtatcactagtaaca 183  Q
    ||||||||| ||||||||||||||||||| |||||||||||||    
T  35083129 aaaatgttatattattgtaacactttttgcatcactagtaaca 35083171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 36035760 - 36035831
Alignment:
Q  257 tgtgaatctaccaaaaaatgttactaattataatagattag-aaaaagtggattatcaatagaagtttttgt 327  Q
    |||||||||||||||| ||||||||||||  | ||||| || ||||| ||||||||| |||| |||||||||    
T  36035760 tgtgaatctaccaaaatatgttactaattgaagtagataagaaaaaaatggattatctataggagtttttgt 36035831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 5498501 - 5498558
Alignment:
Q  19 taaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa 76  Q
    ||||||||| ||||||||||| ||||||| ||||| | | |||| |||||||||||||    
T  5498501 taaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaa 5498558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 2180127 - 2180163
Alignment:
Q  195 attacatttataatttttgagaagttgtaaaaagtgt 231  Q
    ||||||||||||||||||  |||||||||||||||||    
T  2180127 attacatttataattttttggaagttgtaaaaagtgt 2180163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 2943111 - 2943067
Alignment:
Q  196 ttacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||  |||||||| |||||||||||||||| ||||||||    
T  2943111 ttacatttactatttttgataagttgtaaaaagtgtcgcaaaatt 2943067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 40791 - 40553
Alignment:
Q  3 acttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagattttaa 99  Q
    ||||||||||| | | ||||||||| ||| ||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || |||||     
T  40791 acttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagag-ttttag 40693  T
Q  100 ttacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntatta 198  Q
    ||||||||||| ||||| ||||||||| | |||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |        | |||    
T  40692 ttacattttatagtattatctgtaacaattaaaaagtgtc-tcaaatgttacattatcgtaacactttttgtatcactagtaacaatgaaaaagtt-tta 40595  T
Q  199 catttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    |||||||||||||||||||||||||||||||||  |||||||    
T  40594 catttataatttttgagaagttgtaaaaagtgtcccaaaatt 40553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 842 - 602
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaa---ccctattactaaaaagatttt 97  Q
    ||||||||||||| | | ||||||||| ||| ||||||| ||||||| | | | || | ||| ||||||||| |||   || | |||||||| || ||||    
T  842 acacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagataaagtccatgttactaaagag-tttt 744  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||||| ||| ||||| | ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |        | |    
T  743 agttacattttatagtattatctataacaattaaaaagtgtcgcaaa-tgttacattattggaacactttttgtatcactagtaacaat-gaaaaagtgt 646  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  645 tacatttataatttttgagtagttgtaaaaagtgtcgcaaaatt 602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6704 - 6944
Alignment:
Q  1 acacttgaaaattattattaaatcaagtaaaatgttactgattaaatctagtatcatttgaataattgttaggtaaccc---tattactaaaaagatttt 97  Q
    |||||| |||||| | | ||||||||| ||||||||||| ||||||| ||| | || ||||| |||||||||||||  |   | ||||||||| | ||||    
T  6704 acacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagccggtgttactaaaatg-tttt 6802  T
Q  98 aattacattttattgtatt-tctgtaacattcaaaaagtgtcgtaaaatgttacattattgtaacactttttgtatcactagtaacactnnnnnnnntat 196  Q
    | ||||||||||| ||| | ||||||||| ||||||||||| | ||| || ||| ||||||||| ||||||||||||||| |||||| |        | |    
T  6803 agttacattttatagtactatctgtaacaatcaaaaagtgttgcaaa-tggtaccttattgtaaaactttttgtatcacttgtaacaataaaaaag-tgt 6900  T
Q  197 tacatttataatttttgagaagttgtaaaaagtgttgcaaaatt 240  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  6901 tacatttataatttttgaggagttgtaaaaagtgtcgcaaaatt 6944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 446132 - 446084
Alignment:
Q  263 tctaccaaaaaatgttactaattataatagattagaaaaagtggattat 311  Q
    ||||||||||| |||||||||||  ||||||||| ||||||||||||||    
T  446132 tctaccaaaaactgttactaattgaaatagattaaaaaaagtggattat 446084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University