View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_high_27 (Length: 405)
Name: NF20058_high_27
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 22 - 390
Target Start/End: Complemental strand, 37212175 - 37211807
Alignment:
| Q |
22 |
cgatattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaatttcgttcagctttcttggatacgatctgtga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37212175 |
cgatattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcggtgaaatttcgttcagctttcttggatacgatctgtga |
37212076 |
T |
|
| Q |
122 |
aataatatcagatttggacaaaaaggatattgctaacatcaaaggaaatgacctgaaaattaagatcggtgacgttaatgacataaaaaatctgaaagtg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37212075 |
aataatatcagatttggacaaaaaggatattgctaacatcaaaggaaatgacctgaaaattaagatcggtgacgttaatgacataaaaaatctgaaagtg |
37211976 |
T |
|
| Q |
222 |
gaagttgagtggcttcacaccaggctaaccgagatacttgaggcaaggcagattcttaagaagagtggcacattgaaggnnnnnnnngacagcattagga |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37211975 |
gaagttgagtggcttcacaccaggctaactgagatacttgaggcaaggcagattcttaagaagagtggcacattgaaggaaaaaaaagacagcattagga |
37211876 |
T |
|
| Q |
322 |
agttcattgaaatagctgagggtgaattgaaagactgtgaagtagagaagaagaaagtgtctgagaagt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37211875 |
agttcattgaaatagctgagggtgaattgaaagagtgtgaagtagagaagaagaaagtgtctgagaagt |
37211807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 76 - 374
Target Start/End: Complemental strand, 37217782 - 37217484
Alignment:
| Q |
76 |
caaagtcgatgaaatttcgttcagctttcttggatacgatctgtgaaataatatcagatttggacaaaaaggatattgctaacatcaaaggaaatgacct |
175 |
Q |
| |
|
||||||| |||||| |||||| | || ||||| |||||||||| |||||||||||| ||| |||||| ||| || ||| |||||||||||||||||| |
|
|
| T |
37217782 |
caaagtcagtgaaatggcgttcaacattgttggagacgatctgtggaataatatcagagctggtcaaaaatgatgttactagcatcaaaggaaatgacct |
37217683 |
T |
|
| Q |
176 |
gaaaattaagatcggtgacgttaatgacataaaaaatctgaaagtggaagttgagtggcttcacaccaggctaaccgagatacttgaggcaaggcagatt |
275 |
Q |
| |
|
||||| | ||| | |||||||||||| ||||| || || ||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
37217682 |
gaaaaggatgattgatgacgttaatgaaataaataacctaaaagtggaagttgtgtggcttcaaaccaggctaactggaatacttgaggcaaggcagatt |
37217583 |
T |
|
| Q |
276 |
cttaagaagagtggcacattgaaggnnnnnnnngacagcattaggaagttcattgaaatagctgagggtgaattgaaagactgtgaagtagagaagaag |
374 |
Q |
| |
|
|||||| ||||| |||| |||| | |||||||| | |||||||||||||| |||||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
37217582 |
cttaagcagagtcgcacgctgaaagagaaaaaagacagcatcatcaagttcattgaaattgctgagagtgaattgaaagaatgtgaagcagagaagaag |
37217484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 37183732 - 37183608
Alignment:
| Q |
22 |
cgatattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaatttcgttcagctttcttggatacgatctgtga |
121 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||| | |||||||| || ||||||| | ||||| ||||| | || ||||| | |||||||| |
|
|
| T |
37183732 |
cgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatctgtgg |
37183633 |
T |
|
| Q |
122 |
aataatatcagatttggacaaaaag |
146 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
37183632 |
aattatatcagatttggacgaaaag |
37183608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 37194864 - 37194740
Alignment:
| Q |
22 |
cgatattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaatttcgttcagctttcttggatacgatctgtga |
121 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||| | |||||||| || ||||||| | ||||| ||||| | || ||||| | |||||||| |
|
|
| T |
37194864 |
cgatgttaagaaaaattatcggtaagcatggagatattgctaagaattgcttggcaaagtctgtaaaattccgttcggtgttgttggagatgatctgtgg |
37194765 |
T |
|
| Q |
122 |
aataatatcagatttggacaaaaag |
146 |
Q |
| |
|
||| ||||||||||||||| ||||| |
|
|
| T |
37194764 |
aattatatcagatttggacgaaaag |
37194740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 37180685 - 37180623
Alignment:
| Q |
26 |
attaagaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaa |
89 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| | ||||| ||||||||||||||| ||||| |
|
|
| T |
37180685 |
attaagaaaaattatcagcaagcatggagatatagctaagaa-tgtgtgacaaagtcggtgaaa |
37180623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 281
Target Start/End: Original strand, 414227 - 414304
Alignment:
| Q |
204 |
ataaaaaatctgaaagtggaagttgagtggcttcacaccaggctaaccgagatacttgaggcaaggcagattcttaag |
281 |
Q |
| |
|
|||||||| | ||| ||||| ||||| |||||||||| ||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
414227 |
ataaaaaaccagaacgtggatgttgaatggcttcacagcaggctaactgagatacttgaggcaaggcgaattcttaag |
414304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 7527629 - 7527576
Alignment:
| Q |
214 |
tgaaagtggaagttgagtggcttcacaccaggctaaccgagatacttgaggcaa |
267 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
7527629 |
tgaaagtggaagttcagtggcttcacagtaggctaactgacatacttgaggcaa |
7527576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 20451334 - 20451392
Alignment:
| Q |
31 |
gaaaaattatcggcaaacatggagatattaccaagaattgtgtgacaaagtcgatgaaa |
89 |
Q |
| |
|
|||||||||||||||| ||| |||||||| | |||||||||||| ||| |||||||||| |
|
|
| T |
20451334 |
gaaaaattatcggcaagcattgagatatttctaagaattgtgtggcaacgtcgatgaaa |
20451392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 5365186 - 5365236
Alignment:
| Q |
24 |
atattaagaaaaattatcggcaaacatggagatattaccaagaattgtgtg |
74 |
Q |
| |
|
||||||||||||||||||| ||| |||||| ||||| | |||||||||||| |
|
|
| T |
5365186 |
atattaagaaaaattatcgacaagcatggatatatttctaagaattgtgtg |
5365236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University