View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_high_33 (Length: 366)
Name: NF20058_high_33
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 351
Target Start/End: Complemental strand, 41890336 - 41889996
Alignment:
| Q |
11 |
cataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890336 |
cataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatgt |
41890237 |
T |
|
| Q |
111 |
tgcaatcatcccaaactttaaccacttattgtatgattaatttcaaaaaagtaatagctcacataaagtagcatatgttgaaggcatagagtaggagtaa |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41890236 |
tgcaattatcccaaactttaaccacttattgtatgattaatttcaaaaaagtaatagctcacataaagtagcacatgttgaaggcatagagtaggagtaa |
41890137 |
T |
|
| Q |
211 |
tatcttacaaatatcaaatatgttcaaagaagctgcaaatcatgtatgaatgttgattttcttgagttttcatatcaaaataaatagttgttaataagat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
41890136 |
tatcttacaaatatcaaatatgttcaaagaagctgcaaatcatgtatgaatgttggttttcttgagttttcatatcaaaataactagttgttaataagat |
41890037 |
T |
|
| Q |
311 |
tatcttgctcatgtaatcctgaatgtccaattgaagttgat |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41890036 |
tatcttgctcatgtaatcctgaatgtccaattgaagttgat |
41889996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 132
Target Start/End: Complemental strand, 41895894 - 41895772
Alignment:
| Q |
10 |
gcataggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaagtgaatgatg |
109 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
41895894 |
gcataggtgtgtgtattatgttggcatctacaattggtggcttgaggaacattattgttgattcatccacttatagtttttatacctaaagtgcatgatg |
41895795 |
T |
|
| Q |
110 |
ttgcaatcatcccaaactttaac |
132 |
Q |
| |
|
|| |||| ||||||||||||||| |
|
|
| T |
41895794 |
ttacaattatcccaaactttaac |
41895772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 41881725 - 41881653
Alignment:
| Q |
262 |
gttgattttcttgagttttcatatcaaaataaatagttgttaataagattatcttgctcatgtaatcctgaat |
334 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||| || |||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
41881725 |
gttggttttcttgagttttcatatcagaataactaattgttaatgagattatcttgctaatgtaatcttgaat |
41881653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 22552233 - 22552317
Alignment:
| Q |
15 |
ggtgtatgtattatgctggcatcaacagttggtggcttgaggaacattattgctgattcatccacttatagtttctatacctaaa |
99 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||| ||||| || |||||||||||||| | ||||| ||||| ||||||| |
|
|
| T |
22552233 |
ggtgtgtgcattatgctggcatccactattggtggcttcaggaatatcattgctgattcatcatcatatagcttctacacctaaa |
22552317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University