View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_36 (Length: 365)
Name: NF20058_high_36
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 36998649 - 36998309
Alignment:
| Q |
10 |
gcacagatgggaccgccacggcccataatacccgtgttggtggaaatccaaatgccacagggtataccactggtggtacttataaatgaatacaatgata |
109 |
Q |
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| T |
36998649 |
gcacagatgggaccgccacggcccataatacccgtgttggtggaaatccaaatgccacagggtacaccactggtggtacttataaatgaatacaatgata |
36998550 |
T |
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| Q |
110 |
gctaactgcttcattacacacaaaataaggtttagtttatgtggtcgtatgtttgttttcctcttaagtcattgtctgtcttaagaggtttaatttatgt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998549 |
gctaactgcttcattacacacaaaataaggtttagtttatgtggttgtatgtttgttttcctcttaagtcattgtctgtcttaagaggtttaatttatgt |
36998450 |
T |
|
| Q |
210 |
ttgtttcatttccttttcttttttggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcacatggagttgtaatt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998449 |
ttgtttcatttccttttcttttttggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcacatggagttgtaatt |
36998350 |
T |
|
| Q |
310 |
tcactttgcttgaataaataaaaaattaggagagtttaata |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
36998349 |
tcactttgcttgaataaataaaaaattaggagagtttaata |
36998309 |
T |
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