View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_40 (Length: 347)
Name: NF20058_high_40
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 7025965 - 7025629
Alignment:
| Q |
1 |
taaataacttaattaagtgtttatgtataagctaataaagtcaatatataacatatgagtttctttcataaacaatcatggagattttcagaaataagta |
100 |
Q |
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|||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025965 |
taaacaacttaattaattgcttatgtataagctaataaagtcaatatataacctatgagtttctttcataaacaatcatggagattttcagaaataagta |
7025866 |
T |
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| Q |
101 |
aaaaacaacttatagaaatgtaataagatgaggtgttgcgtagctcaactggtatgagctacatgataaggagttggaggtcattggttcaaattcaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025865 |
aaaaacaacttatagaaatgtaataagatgaggtgttgcgtagctcaactggtatgagctacatgataaggagttggaggtcattggttcaaattcaaac |
7025766 |
T |
|
| Q |
201 |
aaagaagacatgtaataagctttccataagctctcccaaacagtctcaaattgttatgcagccagataagcttaaataaatcaatccaaacaaaccttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7025765 |
aaagaagacatgtaataagctttccataagctctcccaaacagtctcaaattgttatgcagccagataagcttaaataaatcaatccaaacaaaccttct |
7025666 |
T |
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| Q |
301 |
atccatccatcagtactataattccttacattctctg |
337 |
Q |
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| T |
7025665 |
atccatccatcagtactataattccttacattctctg |
7025629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 36472713 - 36472652
Alignment:
| Q |
132 |
ggtgttgcgtagctcaactggtatgagctacatgataaggagttggaggtcattggttcaaa |
193 |
Q |
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| T |
36472713 |
ggtgttgggtagctcaactggtctgagctaagggataaggagttggaggtcctgggttcaaa |
36472652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 10429943 - 10429885
Alignment:
| Q |
135 |
gttgcgtagctcaactggtatgagctacatgataaggagttggaggtcattggttcaaa |
193 |
Q |
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|||| |||||||||||||| ||||||| |||||||||| ||||||| |||||||||| |
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| T |
10429943 |
gttgggtagctcaactggtttgagctaagggataaggagtaggaggtctttggttcaaa |
10429885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7282937 - 7282970
Alignment:
| Q |
1 |
taaataacttaattaagtgtttatgtataagcta |
34 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
7282937 |
taaataatttaattaagtgtttatgtataagcta |
7282970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 15646813 - 15646854
Alignment:
| Q |
140 |
gtagctcaactggtatgagctacatgataaggagttggaggt |
181 |
Q |
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| T |
15646813 |
gtagctcaactggtttgagctaaatgttaaggagttggaggt |
15646854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 24838738 - 24838666
Alignment:
| Q |
228 |
aagctctcccaaacagtctc-aaattgtt-atgcagccagataagcttaaataaatcaatccaaacaaacctt |
298 |
Q |
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|||||| ||||||||||||| ||| |||| |||| || ||||||||||||||| ||||||||||||| |||| |
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| T |
24838738 |
aagctcccccaaacagtctcgaaagtgtttatgccaccggataagcttaaataactcaatccaaacaagcctt |
24838666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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