View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_high_44 (Length: 322)
Name: NF20058_high_44
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 44489687 - 44489374
Alignment:
| Q |
1 |
tactcaaacccttctaagtgcggttataaccaaccatcaaacatgtttagatggactaattactgtggctaattctaatttgactatagaaaatgatctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489687 |
tactcaaacccttctaagtgcggttataaccaaccatcaaacatgtttagatggactaattaccgtggctaattctaatttgactatagaaaatgatctt |
44489588 |
T |
|
| Q |
101 |
attagccaactctctaatgatagcaaactccacagtgtttcacttgatctattcacaaagggttgggtgcatgnnnnnnngaacaagacattatggaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44489587 |
attagccaactctctaatgatagcaaactctacagtgtttcacttgatctattcacaaagggttgggtgcatgaaaaaaagaacaagacattatggaatt |
44489488 |
T |
|
| Q |
201 |
ctaccgggttgcatcctcgtttcaaaaacggtagattgcctatgaagatgtcaaatcgaaccagagtcatttaccattcttcaagaggcggaggagaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489487 |
ctaccgggttgcatcctcgtttcaaaaacggtagattgcctatgaagatgtcaaatcgaaccagagtcatttaccattcttcaagaggcggaggagaaac |
44489388 |
T |
|
| Q |
301 |
ccatgatgatgatg |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44489387 |
ccatgatgatgatg |
44489374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University