View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_47 (Length: 314)

Name: NF20058_high_47
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_47
NF20058_high_47
[»] chr4 (1 HSPs)
chr4 (1-289)||(44392495-44392783)


Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 44392783 - 44392495
Alignment:
Q  1 cctttaaccatagtattcaacaaaaagacacaagtttcactgttgttacaacaaaatggtctcaaaacctttccaattcttccttattaaaaataaacaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  44392783 cctttaaccatagtattcaacaaaaagacacaagtttcactgttgttacaacaaaatggtctcaaaacctttccaattcttccttattaaaaataaataa 44392684  T
Q  101 aggaatatatagtttgtcttggaggataaaaacgaaaatgattgaaaagaaatacactaagctagcaagaaagctctattgtacttactttttgcgtatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44392683 aggaatatatagtttgtcttggaggataaaaacgaaaatgattgaaaagaaatacactaagcaagcaagaaagctctattgtacttactttttgcgtatt 44392584  T
Q  201 attttagctctgattaaagctgtagttggattggatcgatgattcgatatgaacttttgtaaattgtaattaattttagaataattgaa 289  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44392583 attttagctctaattaaagctgtagttggattggatcgatgattcgatatgaacttttgtaaattgtaattaattttagaataattgaa 44392495  T

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