View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_54 (Length: 287)

Name: NF20058_high_54
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_54
NF20058_high_54
[»] chr1 (2 HSPs)
chr1 (20-274)||(10414991-10415248)
chr1 (111-274)||(10419971-10420134)
[»] chr5 (7 HSPs)
chr5 (27-272)||(35371121-35371369)
chr5 (21-273)||(35411278-35411533)
chr5 (25-274)||(35386631-35386883)
chr5 (111-274)||(35367483-35367646)
chr5 (155-274)||(35377072-35377191)
chr5 (157-274)||(35426031-35426148)
chr5 (157-274)||(35755462-35755579)
[»] chr2 (5 HSPs)
chr2 (22-269)||(30626666-30626916)
chr2 (22-160)||(30663701-30663842)
chr2 (22-160)||(30672381-30672522)
chr2 (198-269)||(30663619-30663690)
chr2 (198-269)||(30672299-30672370)
[»] chr7 (1 HSPs)
chr7 (21-274)||(29622546-29622802)
[»] chr3 (1 HSPs)
chr3 (21-274)||(1154293-1154549)
[»] chr8 (3 HSPs)
chr8 (136-271)||(15294352-15294487)
chr8 (136-271)||(15474721-15474856)
chr8 (111-239)||(13564902-13565030)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 10414991 - 10415248
Alignment:
20 aaggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatgg 116  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||    
10414991 aaggaacttcttcagaacatgcaactccgattgcaccaaacatcaccaaacacttcttaatcttattttccacaatccccgtctcaacttcggcaaatgg 10415090  T
117 caaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgtt 216  Q
    |||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
10415091 caaaagtaattgtgaatctactatctcgaggattccttctggaattttcattttgcagaattcatgtagactttgactctcagaaaacatgttatttgtt 10415190  T
217 ggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccct 274  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
10415191 ggtctctttccagtgagcatctctaacagaagaatcccaaagctatagatatctccct 10415248  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 10419971 - 10420134
Alignment:
111 aaatggcaaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgtta 210  Q
    |||||||| |||||| |||||||| |||||||| || ||| | || ||||||||||| || |||||||  || || || ||| |||    ||||||||||    
10419971 aaatggcataagcaaatgtgaatccactatctcaagaatttctacaggaattttcatcttacagaatttgtgaaggctaagattctggctaaacatgtta 10420070  T
211 tttgttggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccct 274  Q
    | ||||||||||||||| ||||||||||||||||  |||||||||||||| || | ||||||||    
10420071 tctgttggtctctttccagtgagcatctctaacaagagaatcccaaagctgtaaacatctccct 10420134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 35371369 - 35371121
Alignment:
27 ctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggcaaaagc 123  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| ||   |||||| |||||||||||||| || ||| |||| |||||||| ||||||    
35371369 ctcttcagaacatgcaactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtatcatcttcagcaaatggtaaaagc 35371270  T
124 aattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtctct 223  Q
    || ||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
35371269 aaatgtgaatctactatctcaaggattccttctggaattttcattttgcagaattcatgcagacttagactctcagaaaacatgttatctgttggtctct 35371170  T
224 ttccggtgagcatctctaacagaagaatcccaaagctatagatatctcc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
35371169 ttccggtgagcatctctaacagaagaatcccaaagctatagatatctcc 35371121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 35411533 - 35411278
Alignment:
21 aggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggc 117  Q
    ||||| ||| ||||| |||||||||||||||  | |||||||||||||||| ||   |||||| |||||||||||||| |||||| |||| ||||||||     
35411533 aggaaactcgtcagagcatgcaactccgattctagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggt 35411434  T
118 aaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttg 217  Q
    |||||||| ||||||||||||||||| ||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
35411433 aaaagcaaatgtgaatctactatctcaaggattccttctgaaattttcattttgcagaattcatgtagacttagactctcagaaaagttgttatttgttg 35411334  T
218 gtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccc 273  Q
    |||||||| | |||| ||||||||  ||||||||||||||||| ||||||||||||    
35411333 gtctctttgcagtgaacatctctagtagaagaatcccaaagctgtagatatctccc 35411278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 274
Target Start/End: Complemental strand, 35386883 - 35386631
Alignment:
25 acctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggcaaaa 121  Q
    ||||||| ||||||||| ||||| |||||| |||||||||||||||| ||   |||||| ||||||||||||||| ||||| |||| |||||||| ||||    
35386883 acctctttagaacatgcgactccaattgcagcaaacatcaccaaacaattcctaatcttgttttccacaatccccatctcatcttcagcaaatggaaaaa 35386784  T
122 gcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtct 221  Q
    ||||||| |||||||||||||| |||||| |  |||||||||| ||||||||||||| ||| |||||||  |||||||||||  ||||||||||||||||    
35386783 gcaattgagaatctactatctcaaggattgcttctggaatttttattttgcagaatttatgcagacttaatctctcagaaaagttgttatttgttggtct 35386684  T
222 ctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccct 274  Q
    ||||||||||| ||||||||  ||||||||||||||||| |||||||||||||    
35386683 ctttccggtgaacatctctagtagaagaatcccaaagctgtagatatctccct 35386631  T

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Target: chr5; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 111 - 274
Target Start/End: Complemental strand, 35367646 - 35367483
Alignment:
111 aaatggcaaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgtta 210  Q
    |||||||| |||||| |||||||| |||||||| || ||| | || ||||||||||| || |||||||  || || || ||| ||||  |||||||| ||    
35367646 aaatggcataagcaaatgtgaatccactatctcaagaatttctacgggaattttcatcttacagaatttgtgaaggctaagattctcgcaaaacatgcta 35367547  T
211 tttgttggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccct 274  Q
    | ||||||||||||||| ||||||||||||||||| |||||||||||||| || | ||||||||    
35367546 tctgttggtctctttccagtgagcatctctaacagtagaatcccaaagctgtaaacatctccct 35367483  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 274
Target Start/End: Complemental strand, 35377191 - 35377072
Alignment:
155 ctggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtctctttccggtgagcatctctaacagaagaatccc 254  Q
    ||||||||||||| || || ||||  ||||  |||||| ||||| |||| ||||||| ||||||||||||||| || |||||||||||||||||||| ||    
35377191 ctggaattttcatcttacaaaatttgtgtaagcttagattctcacaaaagatgttatctgttggtctctttccagtaagcatctctaacagaagaattcc 35377092  T
255 aaagctatagatatctccct 274  Q
    | ||||||||||||||||||    
35377091 atagctatagatatctccct 35377072  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 35426148 - 35426031
Alignment:
157 ggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtctctttccggtgagcatctctaacagaagaatcccaa 256  Q
    |||||| |||| || |||||||  |||| ||||| | ||||| |||||||||||| ||||||||||||||| || |||||||||||||||| ||| |||     
35426148 ggaattctcatcttacagaatttgtgtaaacttaaattctcataaaacatgttatctgttggtctctttccagtaagcatctctaacagaacaattccat 35426049  T
257 agctatagatatctccct 274  Q
    ||||||||||||||||||    
35426048 agctatagatatctccct 35426031  T

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Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 35755579 - 35755462
Alignment:
157 ggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtctctttccggtgagcatctctaacagaagaatcccaa 256  Q
    |||||| |||| || |||||||  |||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||||| || ||||| |||||||||     
35755579 ggaattctcatcttacagaatttgtgtagagttagattctcataaaacatgttatctgttggtctctttccggtaagcatttccaacagcagaatcccat 35755480  T
257 agctatagatatctccct 274  Q
    |||| || ||||||||||    
35755479 agctgtaaatatctccct 35755462  T

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Target: chr2 (Bit Score: 109; Significance: 7e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 269
Target Start/End: Complemental strand, 30626916 - 30626666
Alignment:
22 ggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggca 118  Q
    |||| |||||| |||||||||||||| |||  | |||||||||| || || ||   |||||| |||||||||||||| |||||| |||| ||||||||||    
30626916 ggaaactcttctgaacatgcaactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggca 30626817  T
119 aaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttgg 218  Q
    ||||||| ||||||||||||||||| | ||||||| |||||| |||||| || |||||| |||||||||| |||||  ||||||||||| ||||||||||    
30626816 aaagcaaatgtgaatctactatctcaaagattccatctggaactttcatcttacagaatgcatgtagactgagacttccagaaaacatgctatttgttgg 30626717  T
219 tctctttccggtgagcatctctaacagaagaatcccaaagctatagatatc 269  Q
    ||| ||||| |||||||| ||||| |||||||||||  |||| ||||||||    
30626716 tctttttccagtgagcatttctaagagaagaatcccgtagctgtagatatc 30626666  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 30663842 - 30663701
Alignment:
22 ggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggca 118  Q
    |||| ||||||||||||||||||||| |||  | |||||||||| || || ||   |||||| |||||||||||||| |||||| |||| ||||||||||    
30663842 ggaaactcttcagaacatgcaactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggca 30663743  T
119 aaagcaattgtgaatctactatctcgaggattccaactggaa 160  Q
    ||||||| ||||||||||||||||| | ||||||| ||||||    
30663742 aaagcaaatgtgaatctactatctcaaagattccatctggaa 30663701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 160
Target Start/End: Complemental strand, 30672522 - 30672381
Alignment:
22 ggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggca 118  Q
    |||| ||||||||||||||||||||| |||  | |||||||||| || || ||   |||||| |||||||||||||| |||||| |||| ||||||||||    
30672522 ggaaactcttcagaacatgcaactccaattatagcaaacatcactaagcaattcctaatcttgttttccacaatccctgtctcatcttcagcaaatggca 30672423  T
119 aaagcaattgtgaatctactatctcgaggattccaactggaa 160  Q
    ||||||| ||||||||||||||||| | ||||||| ||||||    
30672422 aaagcaaatgtgaatctactatctcaaagattccatctggaa 30672381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 30663690 - 30663619
Alignment:
198 agaaaacatgttatttgttggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatc 269  Q
    |||| ||||| ||||||||||||||||||| |||||||| ||||| |||||||| ||  |||| ||||||||    
30663690 agaagacatgctatttgttggtctctttccagtgagcatttctaatagaagaattccgtagctgtagatatc 30663619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 30672370 - 30672299
Alignment:
198 agaaaacatgttatttgttggtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatc 269  Q
    |||| ||||| ||||||||||||||||||| |||||||| ||||| |||||||| ||  |||| ||||||||    
30672370 agaagacatgctatttgttggtctctttccagtgagcatttctaatagaagaattccgtagctgtagatatc 30672299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 21 - 274
Target Start/End: Original strand, 29622546 - 29622802
Alignment:
21 aggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggc 117  Q
    ||||| ||||| ||||||||||||||| |||  | |||||||||||||||| ||   |||||| |||||||||||||| |||  | |||| ||||||||     
29622546 aggaaactcttgagaacatgcaactccaattctagcaaacatcaccaaacaattcctaatcttgttttccacaatccctgtccgatcttcagcaaatggt 29622645  T
118 aaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttg 217  Q
    | ||| ||  | ||||| |||||||| || |||||  ||||||| ||||| || |||||||  ||||| |||| | ||||| |||||||||||| || ||    
29622646 ataagtaaacgggaatccactatctcaagaattccttctggaatcttcatcttacagaatttgtgtaggcttaaattctcacaaaacatgttatctgctg 29622745  T
218 gtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccct 274  Q
    |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||    
29622746 gtctctttccagtgagcatctctaacagaagaatgccaaagctgtagatatctccct 29622802  T

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Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 274
Target Start/End: Complemental strand, 1154549 - 1154293
Alignment:
21 aggaacctcttcagaacatgcaactccgattgcaccaaacatcaccaaacactt---aatcttattttccacaatccccgtctcaacttcggcaaatggc 117  Q
    ||||| |||||||| |||||||||||| |||  | |||||||||||||||||||   |||||| |||||||||||  | |||| | ||||| |||| |||    
1154549 aggaaactcttcagtacatgcaactccaattctagcaaacatcaccaaacactttttaatcttgttttccacaatttctgtctgatcttcgacaaacggc 1154450  T
118 aaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttg 217  Q
    | ||||||  ||   || |||||||| ||||||||  | | |||||||||||| || || || | ||| |||| | ||||| |||| ||  |||| ||||    
1154449 ataagcaaacgttggtcgactatctcaaggattccttcagaaattttcattttacaaaactcgtataggcttaaattctcacaaaatatactattggttg 1154350  T
218 gtctctttccggtgagcatctctaacagaagaatcccaaagctatagatatctccct 274  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
1154349 gtctctttccggtgagcatctctaacagaagaatcccaaagctgtagatatctccct 1154293  T

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Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 15294487 - 15294352
Alignment:
136 actatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtctctttccggtgagca 235  Q
    |||||||| || |||||  ||||||||||||| || || ||||  |||||||||||| ||||| | |||||| |||||||||||||||||||||||||||    
15294487 actatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttggtctctttccggtgagca 15294388  T
236 tctctaacagaagaatcccaaagctatagatatctc 271  Q
    | || ||||| ||||||||| |||| ||||||||||    
15294387 tttccaacagcagaatcccatagctgtagatatctc 15294352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 15474856 - 15474721
Alignment:
136 actatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgttatttgttggtctctttccggtgagca 235  Q
    |||||||| || |||||  ||||||||||||| || || ||||  |||||||||||| ||||| | |||||| |||||||||||||||||||||||||||    
15474856 actatctcaagaattccttctggaattttcatcttacaaaatttctgtagacttagattctcacagaacatgctatttgttggtctctttccggtgagca 15474757  T
236 tctctaacagaagaatcccaaagctatagatatctc 271  Q
    | || ||||| ||||||||| |||| ||||||||||    
15474756 tttccaacagcagaatcccatagctgtagatatctc 15474721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 239
Target Start/End: Complemental strand, 13565030 - 13564902
Alignment:
111 aaatggcaaaagcaattgtgaatctactatctcgaggattccaactggaattttcattttgcagaattcatgtagacttagactctcagaaaacatgtta 210  Q
    |||||||| ||||||  ||  ||| |||||| | ||||||||  ||||||||||||| || ||| | |  |||||| ||||||  || ||||||||| ||    
13565030 aaatggcataagcaaacgttgatccactatcgcaaggattccttctggaattttcatcttacagtaattgtgtagatttagaccgtcggaaaacatgata 13564931  T
211 tttgttggtctctttccggtgagcatctc 239  Q
    |  ||||||||||||||||||||||||||    
13564930 tccgttggtctctttccggtgagcatctc 13564902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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