View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_56 (Length: 275)
Name: NF20058_high_56
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_56 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 45422224 - 45421965
Alignment:
| Q |
1 |
agaggtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggtcatggttgagggcaatgattgg |
100 |
Q |
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| T |
45422224 |
agaggtgatggcaaagagatgggggaagccaagtgtttttagaaatgatagagaacctatgtttggaagtgggttggtcatggtcgagggcaatgattgg |
45422125 |
T |
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| Q |
101 |
gttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaatatataagcac--atataattttgacctttataa |
198 |
Q |
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| T |
45422124 |
gttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaatatataagcacgtatataattttgacctttatga |
45422025 |
T |
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| Q |
199 |
ttgtggctttcaagggaagaatgttcacgtattccatatatgtatggtcacccattaatt |
258 |
Q |
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| T |
45422024 |
ttgtggctttcaagggaagaatgttcacgtattgcatatatgtatggtcacccattaatt |
45421965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 45412817 - 45412669
Alignment:
| Q |
5 |
gtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggtcatggttgagggcaatgattgggttc |
104 |
Q |
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| T |
45412817 |
gtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagatcccatgtttggaagtgggttggtcatggtcgagggtaatgattgggtac |
45412718 |
T |
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| Q |
105 |
gtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggt |
153 |
Q |
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| T |
45412717 |
gtcaccgtcacattgttgcaccagcattcaatccccttaacctcaaggt |
45412669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 29801906 - 29801813
Alignment:
| Q |
11 |
gcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggtcatggttgagggcaatgattgggttc |
104 |
Q |
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| T |
29801906 |
gcaaagagatggggaaaaccaaatgtgtttagaaatgatagagagcccatgtttggaaaaggtttggttatggctgaaggcagtgaatgggttc |
29801813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 243
Target Start/End: Complemental strand, 26837072 - 26836816
Alignment:
| Q |
5 |
gtgatggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggtcatggttgagggcaatgattgggttc |
104 |
Q |
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||||||||||||||||||||||| || | ||||||||||||||| ||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| |
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| T |
26837072 |
gtgatggcaaagagatggggaaaacctaatgtttttagaaatgacagagatcccatgtttgggaatggcttggtcatggttgagggcaatgattgggttc |
26836973 |
T |
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| Q |
105 |
gtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctc----------------tctcaaatatataagcac--atataattt |
186 |
Q |
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| T |
26836972 |
gtcaccgcaacattgttgcaccatcattcaatcctcttaacctcaaggttctctctctctctctctctctctctcaaatatataagcacatatataattt |
26836873 |
T |
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| Q |
187 |
tgacctttataattgtggctttcaagggaagaatgttcacgtattccatatatgtat |
243 |
Q |
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| T |
26836872 |
tgacctttataattgtggctttcaagggaagaatgttcatgtattgcatatacgtat |
26836816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 66328 - 66244
Alignment:
| Q |
9 |
tggcaaagagatggggaaagccaagtgtttttagaaatgatagagaacccatgtttggaagtgggttggtcatggttgagggcaa |
93 |
Q |
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|||| |||| ||||||||| || ||||| |||||||| || || || ||||||||||||| ||| |||||||||| ||| ||||| |
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| T |
66328 |
tggccaagacatggggaaaacctagtgtgtttagaaaagacagggatcccatgtttggaaatggtttggtcatggctgaaggcaa |
66244 |
T |
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