View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_57 (Length: 273)
Name: NF20058_high_57
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 40669592 - 40669344
Alignment:
| Q |
22 |
aaacatattcacaacaatagagcatcatgaactcctccgatccaactacgccttcaccacgcga------------aggcttctttgttcttccaatcat |
109 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
40669592 |
aaacatatttacaacaatagagcatcatgaactcctccgatccaactacgccttcaccacgcgagtcaccacgcgaaggcttctttgttcttccaatcat |
40669493 |
T |
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| Q |
110 |
ccttttaaccccttgtttggtgatctatttcatggtttggatagtcatcgccatcgaagcagactacccaagtgtccgagtggactatgcctcactcagc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40669492 |
ccttttaaccccttgtttggtgatctatttcatggtttggatagtcatcgccatcgaagcagactacccaagtgtccgagtggactatgcctcactcagc |
40669393 |
T |
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| Q |
210 |
tcatttaaagtaagcaacaccacaaaactcacagccgaatggaacataa |
258 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40669392 |
tcatttaaagtaagcaacaccacaaaactctcagccgaatggaacataa |
40669344 |
T |
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