View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_high_58 (Length: 273)
Name: NF20058_high_58
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_58 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 255
Target Start/End: Complemental strand, 42578166 - 42577926
Alignment:
| Q |
15 |
gatgaagaaaatctgcttatcctatcacattgtatattaagctcatctctttcctttctttatttctccctaatcttaatataattggactcaaacagaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42578166 |
gatgaagaaaatctgcttatcctatcacattgtatattaagctcatctctttcctttctttatttctccctaatcttaatataattggactcaaacagaa |
42578067 |
T |
|
| Q |
115 |
ctatcaacttataagctggacccattatccttctaccaagtctctaagctccatctaaacaggcacattcttttcataacttagttttgtgctgcttatc |
214 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42578066 |
ctatcaacttataagctggaccaattatccttctaacaagtctctaagctccaactaaacaggcacattcttttcataacttagtttagtgctgcttatc |
42577967 |
T |
|
| Q |
215 |
cactatttgcaccacaagattttaatgcatgcatcaaaaag |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42577966 |
cactatttgcaccacaagattttaatgcatgcatcaaaaag |
42577926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Complemental strand, 42570809 - 42570764
Alignment:
| Q |
171 |
aaacaggcacattcttttcataacttagttttgtgctgcttatcca |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
42570809 |
aaacaggcacattcttttcagaacttagttttgtgctacttatcca |
42570764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 129
Target Start/End: Complemental strand, 42570866 - 42570831
Alignment:
| Q |
94 |
tataattggactcaaacagaactatcaacttataag |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42570866 |
tataattggactcaaacagaactatcaaattataag |
42570831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 42608517 - 42608469
Alignment:
| Q |
81 |
tccctaatcttaatataattggactcaaacagaactatcaacttataag |
129 |
Q |
| |
|
||||| |||||||||||| | || ||||||||||||||||| ||||||| |
|
|
| T |
42608517 |
tccctcatcttaatataactagattcaaacagaactatcaagttataag |
42608469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University