View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_63 (Length: 257)
Name: NF20058_high_63
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_63 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 21899827 - 21900056
Alignment:
| Q |
12 |
tcatcattatcaataaaatgtattctccttggactccgctttttagtcttgtgacatattggtggcaagtactttgacaagtcagtagccggtagaaact |
111 |
Q |
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| T |
21899827 |
tcatcattatcaataaaatgtcttctccttggactccgctttttagtcttgtgacatattggtggcaagtactttgacaagtcagtagctggtagaaact |
21899926 |
T |
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| Q |
112 |
caagatggct--gtctcaaggaagatggggcagtcggtgggtggttaataacaccattcttcgaacccttttgagtatgccatctcatatgcccgttcaa |
209 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21899927 |
caagatggctctgtctcaaggaagatggggcagtcggtgggtggttaataacaccattcttcgaacccttttgagtatgccatctcatatgcccgttcaa |
21900026 |
T |
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| Q |
210 |
agcattgttggacggaaaaaccttgttaca |
239 |
Q |
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|||||||||||||| ||||||||||||||| |
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| T |
21900027 |
agcattgttggacgaaaaaaccttgttaca |
21900056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 239
Target Start/End: Original strand, 17700823 - 17701030
Alignment:
| Q |
34 |
ttctccttggactccgctttttagtcttgtgacatattggtggcaagtactttgacaagtcagtagccggtagaaactcaagatggctgtct--caagga |
131 |
Q |
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||||||| |||||||| ||||| ||||| | ||||||| |||||||||||||||||||||||||| |||| |||||||||||||| | | |||||| |
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| T |
17700823 |
ttctcctgggactccgttttttggtcttatacgatattggcggcaagtactttgacaagtcagtagctagtaggaactcaagatggctctgttccaagga |
17700922 |
T |
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| Q |
132 |
agatggggcagtcggtgggtggttaataacaccattcttcgaacccttttgagtatgccatctcatatgcccgttcaaagcattgttggacggaaaaacc |
231 |
Q |
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| T |
17700923 |
agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggataaaaatacc |
17701022 |
T |
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| Q |
232 |
ttgttaca |
239 |
Q |
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|||||||| |
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| T |
17701023 |
ttgttaca |
17701030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 17663256 - 17663053
Alignment:
| Q |
34 |
ttctccttggactccgctttttagtcttgtgacatattggtggcaagtactttgacaagtcagtagccggtagaaactcaagatggctgtctc--aagga |
131 |
Q |
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||||||| |||||||| ||||| ||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| | | ||||| |
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| T |
17663256 |
ttctcctgggactccgttttttggtcttatacgatattggcggcaagtactttgacaagtcagtagccggtaggaactcaagatggctctgttctaagga |
17663157 |
T |
|
| Q |
132 |
agatggggcagtcggtgggtggttaataacaccattcttcgaacccttttgagtatgccatctcatatgcccgttcaaagcattgttggacggaaaaacc |
231 |
Q |
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||||||||||||| ||| | | ||||| | | |||||| |||||||| ||||||||||||||||||| || ||||||||| ||||||| | ||| ||| |
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| T |
17663156 |
agatggggcagtcagtgagggaataatagtatccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcagtgttggatgaaaatacc |
17663057 |
T |
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| Q |
232 |
ttgt |
235 |
Q |
| |
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|||| |
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| T |
17663056 |
ttgt |
17663053 |
T |
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