View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_64 (Length: 256)
Name: NF20058_high_64
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_64 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41890440 - 41890682
Alignment:
| Q |
1 |
cagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaa |
100 |
Q |
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| T |
41890440 |
cagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaa |
41890539 |
T |
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| Q |
101 |
tcaattcatcttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatcc |
200 |
Q |
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| T |
41890540 |
tcaattcattttaaattgacaatttgacataagaatagagaggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatcc |
41890639 |
T |
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| Q |
201 |
aagaagatcaccaaagaatggaaaagtgactccaaagaataat |
243 |
Q |
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| T |
41890640 |
aagaagatcaccaaagaatggaaaagtgactccaaagaataat |
41890682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 41896045 - 41896294
Alignment:
| Q |
4 |
ttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataattgactttttagtttcagaatca |
103 |
Q |
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| T |
41896045 |
ttgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataattcatcttttgattttataatta |
41896144 |
T |
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| Q |
104 |
attcatcttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagtgggagcaaaaccaaatccaccaa |
193 |
Q |
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| T |
41896145 |
attcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaa |
41896244 |
T |
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| Q |
194 |
agaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataat |
243 |
Q |
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| T |
41896245 |
agaacccaagaagatctccaaagaaaggaaaactcaccccaaataataat |
41896294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 154 - 218
Target Start/End: Complemental strand, 22551974 - 22551910
Alignment:
| Q |
154 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaa |
218 |
Q |
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| T |
22551974 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaa |
22551910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 22552136 - 22552070
Alignment:
| Q |
1 |
cagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaatt |
67 |
Q |
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| T |
22552136 |
cagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 43855252 - 43855185
Alignment:
| Q |
154 |
cttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatgg |
221 |
Q |
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| T |
43855252 |
cttacaaaatatgttgtgggagcaaatgccaatcctccaaaaaatccaaggagagcaccaaagaatgg |
43855185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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