View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_66 (Length: 253)

Name: NF20058_high_66
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_66
NF20058_high_66
[»] chr3 (4 HSPs)
chr3 (13-231)||(36502215-36502433)
chr3 (96-225)||(35653122-35653251)
chr3 (160-225)||(35653810-35653875)
chr3 (185-226)||(2288433-2288474)
[»] chr8 (3 HSPs)
chr8 (96-200)||(5664952-5665056)
chr8 (160-225)||(5664347-5664412)
chr8 (188-231)||(37550202-37550246)
[»] chr6 (2 HSPs)
chr6 (104-214)||(6023831-6023941)
chr6 (141-229)||(14964426-14964514)
[»] chr7 (3 HSPs)
chr7 (139-231)||(3772596-3772688)
chr7 (177-235)||(15893854-15893912)
chr7 (148-208)||(15894595-15894655)
[»] chr5 (3 HSPs)
chr5 (139-231)||(22967143-22967235)
chr5 (167-227)||(40269664-40269724)
chr5 (158-231)||(17105365-17105438)
[»] chr2 (1 HSPs)
chr2 (139-231)||(44944034-44944126)
[»] chr4 (5 HSPs)
chr4 (119-208)||(46577522-46577611)
chr4 (143-206)||(6049850-6049913)
chr4 (180-231)||(46578239-46578289)
chr4 (139-208)||(50183214-50183283)
chr4 (188-231)||(33351370-33351414)
[»] chr1 (3 HSPs)
chr1 (139-208)||(17174249-17174318)
chr1 (188-226)||(47693976-47694014)
chr1 (188-231)||(36682271-36682315)
[»] scaffold0025 (1 HSPs)
scaffold0025 (166-226)||(151056-151116)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 36502215 - 36502433
Alignment:
Q  13 aatatagcctctgcccacgatctgaaaaagtgaggttccaatgataggnnnnnnnntggaaccgcacatgggagaagatgaaccgcgagggaagaaggaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||||||| |||||||||||||    
T  36502215 aatatagcctctgcccacgatctgaaaaagtgaggttccaatgataggaaaaaaaatggaaccgcgcatgggagaagatgaaccgcaagggaagaaggaa 36502314  T
Q  113 gaggatgaaaagatcaattgcaatttttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaacctc 212  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  36502315 gaggatgaaaagatcaactgcaatttttaaaattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaataaaactc 36502414  T
Q  213 ctctcatttgatatgccct 231  Q
    |||||| ||||||||||||    
T  36502415 ctctcacttgatatgccct 36502433  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 96 - 225
Target Start/End: Complemental strand, 35653251 - 35653122
Alignment:
Q  96 cgcgagggaagaaggaagaggatgaaaagatcaattgcaatttttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcat 195  Q
    |||||||||||||||||||||||||||||||||  || |||||||  |||||||||||||  ||||||||||| ||||| |||||||| |||||||||||    
T  35653251 cgcgagggaagaaggaagaggatgaaaagatcagctgtaatttttttaattaaatatcactctaaagattaattcaatggttaggatttaaccctctcat 35653152  T
Q  196 ctctcacaataaacctcctctcatttgata 225  Q
    ||||||||||||| ||||||||| ||||||    
T  35653151 ctctcacaataaaactcctctcacttgata 35653122  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 35653810 - 35653875
Alignment:
Q  160 aagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgata 225  Q
    |||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||| ||||||    
T  35653810 aagattaatcaaatggttaggattcaaccctctcatctctcacaataaaactcctctcacttgata 35653875  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 2288433 - 2288474
Alignment:
Q  185 aaccctctcatctctcacaataaacctcctctcatttgatat 226  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  2288433 aaccctctcatctctcacaataaaactcctcttatttgatat 2288474  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 200
Target Start/End: Original strand, 5664952 - 5665056
Alignment:
Q  96 cgcgagggaagaaggaagaggatgaaaagatcaattgcaatttttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcat 195  Q
    ||||||||||||||||||||||||||||||| |  || ||||||| |||||||||||||| |||||||||||||||||| |||||||| |||||||||||    
T  5664952 cgcgagggaagaaggaagaggatgaaaagattagctgtaattttttaaattaaatatcactgtaaagattaatccaatggttaggattcaaccctctcat 5665051  T
Q  196 ctctc 200  Q
    |||||    
T  5665052 ctctc 5665056  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 225
Target Start/End: Complemental strand, 5664412 - 5664347
Alignment:
Q  160 aagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgata 225  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||| ||||||    
T  5664412 aagattaatccaatggttaggattcaaccctctcatctttcacaataaaactcctctcacttgata 5664347  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 37550246 - 37550202
Alignment:
Q  188 cctctcatctctcacaataa-acctcctctcatttgatatgccct 231  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||    
T  37550246 cctctcatctctcactataacaactcctctcatttgatatgccct 37550202  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 214
Target Start/End: Complemental strand, 6023941 - 6023831
Alignment:
Q  104 aagaaggaagaggatgaaaagatcaattgcaatttttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcaca 203  Q
    ||||| |||||||||||||| ||||  ||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||||||| |||||||    
T  6023941 aagaaagaagaggatgaaaaaatcagctgcaatttttaaaattaaatatcactgtaaagattagtccaatgattaggatttaagcctctcatatctcaca 6023842  T
Q  204 ataaacctcct 214  Q
    ||||| |||||    
T  6023841 ataaaactcct 6023831  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 14964426 - 14964514
Alignment:
Q  141 aaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatatgcc 229  Q
    ||||||||  |||| | ||||||||||||||| |   | |||| |||||| |||||||||| |||||| ||| ||| ||||||||||||    
T  14964426 aaaattaatcatcatactaaagattaatccaagggacatgatttaaccctatcatctctcaaaataaaactcatctaatttgatatgcc 14964514  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 3772688 - 3772596
Alignment:
Q  139 ttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatatgccct 231  Q
    ||||||||||| | |||| |||||||||||| |||| | |||||  ||||||||||||||||||||||||   ||||||||||||||||||||    
T  3772688 ttaaaattaaagaacacaataaagattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaacctctcatttgatatgccct 3772596  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 15893912 - 15893854
Alignment:
Q  177 taggattaaaccctctcatctctcacaataaacctcctctcatttgatatgccctgtat 235  Q
    ||||||| || ||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  15893912 taggatttaatcctctcatctctcacaataaaactcatctcatttgatatgtcctgtat 15893854  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 15894595 - 15894655
Alignment:
Q  148 aatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaa 208  Q
    |||||||  ||||||||||||| || | |||||||| |||||||||| ||||||| |||||    
T  15894595 aatatcatggtaaagattaatctaagggttaggattcaaccctctcacctctcacgataaa 15894655  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 22967143 - 22967235
Alignment:
Q  139 ttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatatgccct 231  Q
    ||||||||||| | |||| |||| ||||||| |||| | |||||  ||||||||||||||||||||||||   ||||||| ||||||||||||    
T  22967143 ttaaaattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaacctctcacttgatatgccct 22967235  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 40269664 - 40269724
Alignment:
Q  167 atccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatatg 227  Q
    |||||||| |||  ||||||||||||||||||||  |||||  ||||||||||||||||||    
T  40269664 atccaatggttataattaaaccctctcatctctcgtaataagactcctctcatttgatatg 40269724  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 17105438 - 17105365
Alignment:
Q  158 taaagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatatgccct 231  Q
    ||||||||||| ||||| |||||||| ||||||||||||| |||   |||   |||||||||||||||| ||||    
T  17105438 taaagattaattcaatggttaggatttaaccctctcatctttcattttaagagtcctctcatttgatattccct 17105365  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 231
Target Start/End: Original strand, 44944034 - 44944126
Alignment:
Q  139 ttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatatgccct 231  Q
    ||||||||||| | |||| |||| ||||||| |||| | |||||  ||||||||||||||||||||||||   | ||||| ||||||||||||    
T  44944034 ttaaaattaaagaacacaataaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaacatctcacttgatatgccct 44944126  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 46577611 - 46577522
Alignment:
Q  119 gaaaagatcaattgcaatttttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaa 208  Q
    |||||| ||| ||||| || |||||||| |||| ||  ||||||||||||| || | |||||||| |||||||||| |||||| ||||||    
T  46577611 gaaaagttcagttgcagttattaaaattcaataccatggtaaagattaatctaagggttaggattcaaccctctcacctctcataataaa 46577522  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 6049913 - 6049850
Alignment:
Q  143 aattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaata 206  Q
    |||| |||| ||| |||||||||||||||| | | || ||| ||||||||||||||||||||||    
T  6049913 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaata 6049850  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 46578239 - 46578289
Alignment:
Q  180 gattaaaccctctcatctctcacaataaacctcctctcatttgatatgccct 231  Q
    |||| |||||||||| ||||||||||||| |||||||||||||| |||||||    
T  46578239 gatttaaccctctca-ctctcacaataaaactcctctcatttgaaatgccct 46578289  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 50183283 - 50183214
Alignment:
Q  139 ttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaa 208  Q
    |||||||| |||| ||  |||||||||||||||| |  ||||||| |||||||||| |||||| ||||||    
T  50183283 ttaaaattcaataccattgtaaagattaatccaagggctaggattcaaccctctcacctctcataataaa 50183214  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 33351414 - 33351370
Alignment:
Q  188 cctctcatctctcacaataa-acctcctctcatttgatatgccct 231  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||    
T  33351414 cctctcatctctcactataacaactcctctcatttgatatgccct 33351370  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 208
Target Start/End: Original strand, 17174249 - 17174318
Alignment:
Q  139 ttaaaattaaatatcacagtaaagattaatccaatgattaggattaaaccctctcatctctcacaataaa 208  Q
    |||||||| |||| ||  ||||| ||||||||||||  ||||||| |||||||||| |||||||||||||    
T  17174249 ttaaaattcaataccatggtaaatattaatccaatggctaggattcaaccctctcacctctcacaataaa 17174318  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 47694014 - 47693976
Alignment:
Q  188 cctctcatctctcacaataaacctcctctcatttgatat 226  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  47694014 cctctcatctctcacaataaaactcctctcacttgatat 47693976  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 36682271 - 36682315
Alignment:
Q  188 cctctcatctctcacaataa-acctcctctcatttgatatgccct 231  Q
    ||||||||||||||| |||| | ||||||||||||||||||||||    
T  36682271 cctctcatctctcactataacaactcctctcatttgatatgccct 36682315  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 151116 - 151056
Alignment:
Q  166 aatccaatgattaggattaaaccctctcatctctcacaataaacctcctctcatttgatat 226  Q
    ||||||| | |||||||| |||||||||||||| || |||||| ||||| |||||||||||    
T  151116 aatccaagggttaggatttaaccctctcatctcccataataaaactcctttcatttgatat 151056  T

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