View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_68 (Length: 250)
Name: NF20058_high_68
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_68 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4412687 - 4412448
Alignment:
| Q |
1 |
tctattcatttcagcatacatttcctcaatcaatggtttccatagccgaacacgcgcattaataaaccagtttgatacctagacaaccaacaacaaataa |
100 |
Q |
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| T |
4412687 |
tctattcatttcagcatacatttcctcaatcaatggtttccatagccgaacacgcgcattaataaaccagtttgatacctagacaaccaacaacaaataa |
4412588 |
T |
|
| Q |
101 |
tatgtttcataacttttatatgataagggctatatttttaatggcaaatagtttctctcaaaataagcaaggattaagaaatgtctacggatccggaaaa |
200 |
Q |
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| T |
4412587 |
tatgtttcataacttttatatgataagggctatatttttaatggcaaatagttcctctcaaaataagcaaggattaagaaatgtctacggatccggaaaa |
4412488 |
T |
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| Q |
201 |
ccacatgttttcacccgataaacaatctcggcccttcatc |
240 |
Q |
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| T |
4412487 |
ccacatgttttcacccgataaacaatctcggcccttcatc |
4412448 |
T |
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Back To:
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 126002 - 126053
Alignment:
| Q |
123 |
ataagggctatatttttaatggcaaatagtttctctcaaaataagcaaggat |
174 |
Q |
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| T |
126002 |
ataagggctacatttttcatggcaaatagttcctctctaaataaacaaggat |
126053 |
T |
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