View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_69 (Length: 250)

Name: NF20058_high_69
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_69
NF20058_high_69
[»] chr1 (2 HSPs)
chr1 (124-250)||(38148261-38148388)
chr1 (144-216)||(25385920-25385989)
[»] chr8 (4 HSPs)
chr8 (144-250)||(39732846-39732950)
chr8 (144-217)||(10701950-10702020)
chr8 (144-216)||(32892773-32892842)
chr8 (181-223)||(5546640-5546682)
[»] chr6 (4 HSPs)
chr6 (124-223)||(25346174-25346270)
chr6 (124-223)||(21787974-21788070)
chr6 (160-250)||(6099837-6099925)
chr6 (144-216)||(8661120-8661189)
[»] chr3 (6 HSPs)
chr3 (124-223)||(11844085-11844181)
chr3 (161-250)||(15332629-15332716)
chr3 (144-216)||(10242592-10242661)
chr3 (144-216)||(38453450-38453519)
chr3 (144-216)||(42195606-42195675)
chr3 (144-216)||(49153424-49153493)
[»] chr7 (2 HSPs)
chr7 (148-223)||(347456-347528)
chr7 (148-223)||(26382440-26382512)
[»] scaffold0208 (1 HSPs)
scaffold0208 (144-217)||(8117-8187)
[»] chr4 (5 HSPs)
chr4 (144-221)||(49978168-49978241)
chr4 (144-216)||(10737677-10737746)
chr4 (144-216)||(10951446-10951515)
chr4 (144-216)||(48162905-48162974)
chr4 (144-223)||(33459709-33459785)
[»] chr5 (3 HSPs)
chr5 (144-216)||(28529732-28529801)
chr5 (181-223)||(41290758-41290800)
chr5 (148-223)||(12690631-12690702)
[»] chr2 (3 HSPs)
chr2 (144-216)||(13457746-13457815)
chr2 (144-217)||(23335718-23335788)
chr2 (144-216)||(35089046-35089115)
[»] scaffold0236 (1 HSPs)
scaffold0236 (148-223)||(1540-1611)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 124 - 250
Target Start/End: Complemental strand, 38148388 - 38148261
Alignment:
Q  124 cacacttaagagttgttgaatatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacattt-c 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||| |    
T  38148388 cacacttaagagttgttgaatatggttactcagcagcataatgaactaattcggcgacctacattatgtcgatagtgcctcgtaaatttaagatatttcc 38148289  T
Q  223 catctaacatgtaaatttaagaccattt 250  Q
    ||||||||||||||||||||||||||||    
T  38148288 catctaacatgtaaatttaagaccattt 38148261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 25385989 - 25385920
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  25385989 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 25385920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 144 - 250
Target Start/End: Complemental strand, 39732950 - 39732846
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacattt-ccatctaacatgtaaatttaa 242  Q
    ||||||||||||||| ||||||||||||||| |||   |||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  39732950 tatggttactcagcaacataatgaactaatttggc---ctacattatgtcggtagtgcctcgtaaatttaagacatttcccatctgacatgtaaatttaa 39732854  T
Q  243 gaccattt 250  Q
    ||||||||    
T  39732853 gaccattt 39732846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 10701950 - 10702020
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagac 217  Q
    |||||||||| |||| ||||||| | |||||| ||   |||||||||||||||||||||| |||||||||||||    
T  10701950 tatggttacttagcaacataatggattaattcagc---ctacattatgtcagtagtgccttgtaaatttaagac 10702020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 32892773 - 32892842
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  32892773 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 32892842  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 5546682 - 5546640
Alignment:
Q  181 cctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    ||||||||||||| || |||||| |||||||||||||||||||    
T  5546682 cctacattatgtcggttgtgccttgtaaatttaagacatttcc 5546640  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 223
Target Start/End: Original strand, 25346174 - 25346270
Alignment:
Q  124 cacacttaagagttgttgaatatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    |||||||||| |||||||| |||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||| |||||||||||||||||||    
T  25346174 cacacttaagggttgttgagtatggttactcagcagtataatgaactaattcgg---cctacattatgtcggtagtgccttgtaaatttaagacatttcc 25346270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 21788070 - 21787974
Alignment:
Q  124 cacacttaagagttgttgaatatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||   |||||||||||||||| ||  ||||| |||||||||||||||||||    
T  21788070 cacacttaagggttgttgagtatggttactcagcagcataatgaactaatt---cgacctacattatgtcggttatgccttgtaaatttaagacatttcc 21787974  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 6099837 - 6099925
Alignment:
Q  160 cataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttc-catctaacatgtaaatttaagaccattt 250  Q
    |||||||||||||||||||   |||||||||||  ||||||||| |||||||||||||||||| |||||  | |||||||||||||||||||    
T  6099837 cataatgaactaattcggc---ctacattatgttggtagtgccttgtaaatttaagacatttctcatctgccttgtaaatttaagaccattt 6099925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 8661189 - 8661120
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  8661189 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 8661120  T

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Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 11844181 - 11844085
Alignment:
Q  124 cacacttaagagttgttgaatatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||  ||||||||| |||||||||||||||||||    
T  11844181 cacacttaaggattgttgagtatggttactcagcagcataatgaactaattcgg---cctacattatgttggtagtgccttgtaaatttaagacatttcc 11844085  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 250
Target Start/End: Original strand, 15332629 - 15332716
Alignment:
Q  161 ataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttc-catctaacatgtaaatttaagaccattt 250  Q
    ||||||||||||||||||   |||||||||||| ||| ||||| |||||||||| ||||||| |||||  | |||||||||||||||||||    
T  15332629 ataatgaactaattcggc---ctacattatgtcggtaatgccttgtaaatttaaaacatttctcatctgccttgtaaatttaagaccattt 15332716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 10242661 - 10242592
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  10242661 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 10242592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 38453519 - 38453450
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  38453519 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 38453450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 42195675 - 42195606
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  42195675 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 42195606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 49153424 - 49153493
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  49153424 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 49153493  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 347456 - 347528
Alignment:
Q  148 gttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    |||||| |||| ||||||| |||||||||||   |||||||||||| ||||||||| |||||||||||||||||||    
T  347456 gttacttagcaacataatggactaattcggc---ctacattatgtcggtagtgccttgtaaatttaagacatttcc 347528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 26382440 - 26382512
Alignment:
Q  148 gttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    ||||||||||| ||||||||||||||||||   |||||||||||||   ||||||| || ||||||||||||||||    
T  26382440 gttactcagcaacataatgaactaattcgg---cctacattatgtcgtaagtgccttgtgaatttaagacatttcc 26382512  T

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Target: scaffold0208 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 8117 - 8187
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagac 217  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||||| |||||||||||||    
T  8117 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgccttgtaaatttaagac 8187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 49978168 - 49978241
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacattt 221  Q
    |||||||||| |||| ||||||| ||||||||||   ||||||||||||| ||||||||| ||||| |||||||||||    
T  49978168 tatggttacttagcaacataatggactaattcgg---cctacattatgtcggtagtgccttgtaaa-ttaagacattt 49978241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 10737746 - 10737677
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  10737746 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 10737677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 10951515 - 10951446
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  10951515 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 10951446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 48162905 - 48162974
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  48162905 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 48162974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 33459785 - 33459709
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    |||||||||| |||| ||||||||||||||||    |||||||||||||| || ||| || ||||||| |||||||||||    
T  33459785 tatggttacttagcaacataatgaactaattca---acctacattatgtcggtcgtgtcttgtaaattcaagacatttcc 33459709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 28529801 - 28529732
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  28529801 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 28529732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 41290758 - 41290800
Alignment:
Q  181 cctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  41290758 cctacattatgtcggtagtgccttgtaaatttaagacatttcc 41290800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 12690702 - 12690631
Alignment:
Q  148 gttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    |||||| |||| ||||||| |||||||||||   |||||||||||| ||||||||| |||||||| ||||||||||    
T  12690702 gttacttagcaacataatggactaattcggc---ctacattatgtccgtagtgccttgtaaattt-agacatttcc 12690631  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 13457746 - 13457815
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||||| |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  13457746 tatggttacttagcaacataatggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 13457815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 23335718 - 23335788
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagac 217  Q
    |||||||||| || | |||||||||||||||| ||   || ||||||||| ||||||||| |||||||||||||    
T  23335718 tatggttacttagaaacataatgaactaattcagc---cttcattatgtcggtagtgccttgtaaatttaagac 23335788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 35089115 - 35089046
Alignment:
Q  144 tatggttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaaga 216  Q
    |||||||||| |||| ||||| | |||||||| ||   |||||||||||||||||||| | ||||||||||||    
T  35089115 tatggttacttagcaacataaaggactaattcagc---ctacattatgtcagtagtgctttgtaaatttaaga 35089046  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 1540 - 1611
Alignment:
Q  148 gttactcagcagcataatgaactaattcggcgacctacattatgtcagtagtgcctcgtaaatttaagacatttcc 223  Q
    |||||| |||| ||||||| |||||||||||   |||||||||||| ||||||||| |||||||| ||||||||||    
T  1540 gttacttagcaacataatggactaattcggc---ctacattatgtccgtagtgccttgtaaattt-agacatttcc 1611  T

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