View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_7 (Length: 633)

Name: NF20058_high_7
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_7
NF20058_high_7
[»] chr2 (5 HSPs)
chr2 (19-616)||(41631830-41632424)
chr2 (71-133)||(28044712-28044774)
chr2 (45-133)||(29378510-29378598)
chr2 (34-88)||(28811272-28811326)
chr2 (63-119)||(42616731-42616787)
[»] chr6 (15 HSPs)
chr6 (65-119)||(26373098-26373152)
chr6 (65-129)||(9194424-9194488)
chr6 (74-133)||(264556-264615)
chr6 (74-133)||(2732937-2732996)
chr6 (74-134)||(770342-770402)
chr6 (79-119)||(19051218-19051258)
chr6 (30-133)||(1912463-1912566)
chr6 (66-133)||(9163757-9163824)
chr6 (74-133)||(14399816-14399874)
chr6 (39-102)||(19390976-19391039)
chr6 (81-131)||(7180711-7180761)
chr6 (74-106)||(5565469-5565501)
chr6 (31-119)||(7939890-7939978)
chr6 (65-133)||(26494409-26494477)
chr6 (71-127)||(31694720-31694776)
[»] chr1 (11 HSPs)
chr1 (81-133)||(15923774-15923826)
chr1 (80-133)||(35488283-35488336)
chr1 (74-118)||(12132085-12132129)
chr1 (30-133)||(24808350-24808453)
chr1 (91-133)||(7347694-7347736)
chr1 (75-133)||(32470260-32470318)
chr1 (80-133)||(15956879-15956932)
chr1 (64-133)||(19484784-19484853)
chr1 (39-99)||(400930-400990)
chr1 (65-133)||(6025962-6026030)
chr1 (81-131)||(15364962-15365009)
[»] chr7 (5 HSPs)
chr7 (74-133)||(1110409-1110468)
chr7 (74-133)||(7245950-7246009)
chr7 (75-133)||(23747324-23747382)
chr7 (97-133)||(7982364-7982400)
chr7 (81-133)||(25314038-25314090)
[»] chr5 (6 HSPs)
chr5 (53-120)||(40990971-40991038)
chr5 (74-131)||(37056370-37056427)
chr5 (80-133)||(41015010-41015063)
chr5 (74-133)||(41894418-41894477)
chr5 (75-133)||(2643872-2643930)
chr5 (93-133)||(9130960-9131000)
[»] chr4 (7 HSPs)
chr4 (30-133)||(13485309-13485412)
chr4 (30-120)||(34417347-34417437)
chr4 (72-133)||(13298530-13298591)
chr4 (83-133)||(55314497-55314547)
chr4 (80-125)||(31675048-31675093)
chr4 (53-133)||(30617249-30617328)
chr4 (64-120)||(34581593-34581649)
[»] chr3 (4 HSPs)
chr3 (75-133)||(25252041-25252099)
chr3 (53-119)||(43307607-43307673)
chr3 (71-132)||(51295684-51295745)
chr3 (77-133)||(14200000-14200056)
[»] chr8 (8 HSPs)
chr8 (63-120)||(39550956-39551013)
chr8 (82-134)||(6895807-6895859)
chr8 (74-133)||(26273040-26273099)
chr8 (30-133)||(29749222-29749325)
chr8 (91-133)||(34297893-34297935)
chr8 (73-134)||(5510087-5510148)
chr8 (84-133)||(18737693-18737742)
chr8 (74-118)||(43876569-43876613)
[»] scaffold0491 (1 HSPs)
scaffold0491 (84-133)||(4392-4441)


Alignment Details
Target: chr2 (Bit Score: 532; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 19 - 616
Target Start/End: Original strand, 41631830 - 41632424
Alignment:
Q  19 atagcagcagtttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaata 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41631830 atagcagcagtttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcatatcacaaaacaata 41631929  T
Q  119 gcaatttgttcaaatcagcgttgtcaaaccgtagcactatagtatagcagaatttgaattgatcgacgtcgttccacaatccaagatttagaacaaagtg 218  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  41631930 gcaatttgttcaaatcagcgttgtcaaaccgtggcactatagcatagcagaatttgaattgatcgatgtcgttccacaatccgagatttagaacaaagtg 41632029  T
Q  219 ttgttaaatagccattattgtggtacaaatagcgcggcagtatattcaaatttggaaagacatctattttccatcatccgcagttgataacaccggttca 318  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  41632030 ttgttaaatagccattattgtggcacaaatagcgcggcagtatattcgaatttgaaaagacatctattttccatcatccgcaattgataacaccggttca 41632129  T
Q  319 aattcagttacgctatagccattgcttgggaacaaatccaatttggaataaacagtgccgttatagccactacttgacaacgctagatacaaaatttaat 418  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||    
T  41632130 aattcagttacgctatagccattacttgggaacaaatccaatttggaataaacagcgccgttatagccactaattgacaacgctagatacaaaatttaat 41632229  T
Q  419 gttgacaatttcaagaggacaacaaatcaaatttgaactaaaccgctcgcaaagctactatttgacaaaaccaagataaattcaaaatttcatataacaa 518  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41632230 gtt---aatttcaagaggacaacaaatcaaatttgaactaaaccgctcgcaaagctactatttgacaaaaccaagataaattcaaaatttcatataacaa 41632326  T
Q  519 ttttgaaatgaccaatttaaaatcctcagaagaccatgaatttcaattccaacatgtacatcagtcataactcataattggtaaacagacccagaatc 616  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41632327 ttttgaaatgaccaatttaaaatcctcagaagaccatgaatttcaattccaacatgtacatcagtcataactcaaaattggtaaacagacccagaatc 41632424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 28044712 - 28044774
Alignment:
Q  71 ccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||| |||||||||| ||||||||| || |||||||||||||||| | ||| |||||||    
T  28044712 ccactatttgacaacactttgtactaaatcgcatatcacaaaacaatagtagtttattcaaat 28044774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 29378598 - 29378510
Alignment:
Q  45 gctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||| ||||||| |   |||| || ||||| ||||| |||| |||| |||||||||||| || ||||||| ||||||||||||||    
T  29378598 gctacagcactatagcgtttatatagccgctattagacaatactttgtacaaaatagcgtatcgcagaacaatatcaatttgttcaaat 29378510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 28811326 - 28811272
Alignment:
Q  34 aattttgctatgctacagcgctatagcatcactataaccactattcgacaacact 88  Q
    ||||| |||||||||||| ||||||||| ||||||| || ||||| |||||||||    
T  28811326 aatttcgctatgctacagtgctatagcaccactatagccgctatttgacaacact 28811272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 42616731 - 42616787
Alignment:
Q  63 cactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatag 119  Q
    |||||||||  ||||| |||||||||| ||||||||||| | ||| |||||||||||    
T  42616731 cactataactgctatttgacaacactttgtactaaatagtggatcgcaaaacaatag 42616787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 65 - 119
Target Start/End: Complemental strand, 26373152 - 26373098
Alignment:
Q  65 ctataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatag 119  Q
    |||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagcgtatcacagaacaatag 26373098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 9194424 - 9194488
Alignment:
Q  65 ctataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttc 129  Q
    |||||||||||||| ||||||| || |||||||||| |||||  || ||||||||||||||||||    
T  9194424 ctataaccactatttgacaacattttgtactaaataccgtatagcagaacaatagcaatttgttc 9194488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 264615 - 264556
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||| |||||||||||| || |||| ||||||| ||||||||||||||    
T  264615 ctatttgacaacactttgtactaaatagcctaccacagaacaataacaatttgttcaaat 264556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 2732996 - 2732937
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| ||||||| || |||||||||||| |||| |||||||||||| ||||||||||||    
T  2732996 ctatttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaat 2732937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 770402 - 770342
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaatc 134  Q
    ||||| |||||| ||| |||||||||||||||||||  ||||||| | |||||||||||||    
T  770402 ctatttgacaaccctttgtactaaatagcgtatcacggaacaataccgatttgttcaaatc 770342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 19051258 - 19051218
Alignment:
Q  79 cgacaacacttcgtactaaatagcgtatcacaaaacaatag 119  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  19051258 cgacaacacttcgtactaaatcgtgtatcacaaaacaatag 19051218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 1912463 - 1912566
Alignment:
Q  30 ttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttc 129  Q
    ||||||||  ||||||| || | |||||||| ||||||||  | ||||| ||||| | || |||||||||||  |||| || ||||||||| ||||||||    
T  1912463 ttcaaattccgctatgcaacggtgctatagcgtcactatagtcgctatttgacaataatttgtactaaatagtatatcgcagaacaatagcgatttgttc 1912562  T
Q  130 aaat 133  Q
    ||||    
T  1912563 aaat 1912566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 9163824 - 9163757
Alignment:
Q  66 tataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| ||||||| ||||||| || |||||||||||||||| ||  ||||||||  ||||||||||||    
T  9163824 tataaacactatttgacaacattttgtactaaatagcgtataacggaacaatagggatttgttcaaat 9163757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 14399874 - 14399816
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||| |||||||||||| |||||||||||||||||  |||||| ||||    
T  14399874 ctatttgacaacactttgtactaaatagc-tatcacaaaacaatagcggtttgtttaaat 14399816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 102
Target Start/End: Complemental strand, 19391039 - 19390976
Alignment:
Q  39 tgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagc 102  Q
    ||||||||||||| ||||||||  |||||||||  ||||| ||||| |||| ||||||||||||    
T  19391039 tgctatgctacagtgctatagcgccactataactgctatttgacaatactttgtactaaatagc 19390976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 7180711 - 7180761
Alignment:
Q  81 acaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaa 131  Q
    |||| |||| ||||||||||| |||||||| |||||||||||||| |||||    
T  7180711 acaatactttgtactaaatagtgtatcacagaacaatagcaatttattcaa 7180761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 5565469 - 5565501
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtat 106  Q
    ||||| |||||||||||||||||||||||||||    
T  5565469 ctatttgacaacacttcgtactaaatagcgtat 5565501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 7939978 - 7939890
Alignment:
Q  31 tcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatag 119  Q
    |||||||  |||||||||||| |||||||   ||||||| || ||||| |||| ||||| ||||| ||||| ||||| || ||||||||    
T  7939978 tcaaattccgctatgctacagtgctatagagccactatagccgctatttgacatcactttgtactgaatagagtatctcagaacaatag 7939890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 26494477 - 26494409
Alignment:
Q  65 ctataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||| | ||| ||||||| || ||||||||||||| ||  || ||||||||||||| ||||||||    
T  26494477 ctataaccgcaatttgacaacagtttgtactaaatagcgaattgcagaacaatagcaattagttcaaat 26494409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 31694720 - 31694776
Alignment:
Q  71 ccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgt 127  Q
    |||||||| || |||| || ||||||||||| |||||||| |||||||||| |||||    
T  31694720 ccactatttgaaaacattttgtactaaatagtgtatcacagaacaatagcagtttgt 31694776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 15923774 - 15923826
Alignment:
Q  81 acaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||||||||| |||||| |||||||||||||||||| ||| ||||||||    
T  15923774 acaacacttcgtacaaaatagtgtatcacaaaacaatagcgattagttcaaat 15923826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 35488336 - 35488283
Alignment:
Q  80 gacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||||||||||||||| |  |||||||||| |||||||||||    
T  35488336 gacaaaacttcgtactaaatagcgtatcccggaacaatagcagtttgttcaaat 35488283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 12132085 - 12132129
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaata 118  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||    
T  12132085 ctatacgacaacactttgtactaaatagcgtatcataaaacaata 12132129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 24808453 - 24808350
Alignment:
Q  30 ttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttc 129  Q
    |||||||| ||||||||||||| ||| |||||   |||| |||| |||| |||||||||| | |||||||| | |||| |  || ||||| |||||||||    
T  24808453 ttcaaattctgctatgctacagtgctttagcactgctatgaccattatttgacaacactttgaactaaataccatatcgcggaataatagtaatttgttc 24808354  T
Q  130 aaat 133  Q
    ||||    
T  24808353 aaat 24808350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 133
Target Start/End: Complemental strand, 7347736 - 7347694
Alignment:
Q  91 gtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||||||||| ||||  |||||||||||||||||||||||||    
T  7347736 gtactaaatagtgtattgcaaaacaatagcaatttgttcaaat 7347694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 32470260 - 32470318
Alignment:
Q  75 tattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||| |||||||||||||||| ||||||| |||||| || |||| | ||||||||||||    
T  32470260 tatttgacaacacttcgtactgaatagcgcatcacagaataataactatttgttcaaat 32470318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 15956932 - 15956879
Alignment:
Q  80 gacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||||| ||||||||||||||||  |  ||||||| ||||||||||||||    
T  15956932 gacaacactttgtactaaatagcgtatggcggaacaataacaatttgttcaaat 15956879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 19484784 - 19484853
Alignment:
Q  64 actataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||| ||||| || | |||||||||||||||||| || |||| || |||||||||| |||||| ||||    
T  19484784 actatagccactgtttgtcaacacttcgtactaaatcgcatatcccagaacaatagcagtttgttaaaat 19484853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 400990 - 400930
Alignment:
Q  39 tgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaat 99  Q
    ||||||||||||||||| ||||  |||||||||  ||||| ||||| |||| |||||||||    
T  400990 tgctatgctacagcgctgtagcgccactataacttctatttgacaatactttgtactaaat 400930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 6025962 - 6026030
Alignment:
Q  65 ctataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||| ||||||| || |||||||||||| |||| |  ||||||| | ||||||||||||    
T  6025962 ctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaat 6026030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 15364962 - 15365009
Alignment:
Q  81 acaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaa 131  Q
    ||||||||| ||||||| ||   ||||||||||||||||||||||||||||    
T  15364962 acaacactttgtactaagta---tatcacaaaacaatagcaatttgttcaa 15365009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 1110409 - 1110468
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||| | |||||||||| |||| | |||||||||||||||||||||||    
T  1110409 ctatttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaat 1110468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 7245950 - 7246009
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||| ||||||||||||||||| ||||| |||||| ||||||| ||||    
T  7245950 ctatttgacaacactttgtactaaatagcgtatcgcaaaagaatagcgatttgtttaaat 7246009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 23747382 - 23747324
Alignment:
Q  75 tattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||||||| || ||||||| |||| ||||||| ||||||||| ||||||||||||    
T  23747382 tattcgacaacagtttgtactaactagcatatcacagaacaatagctatttgttcaaat 23747324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 133
Target Start/End: Original strand, 7982364 - 7982400
Alignment:
Q  97 aatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||||||||||||||||||||||||    
T  7982364 aatagtgtatcacaaaacaatagcaatttgttcaaat 7982400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 25314038 - 25314090
Alignment:
Q  81 acaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||||||| |||| |||||| |||||||| ||||||| | ||||||||||||    
T  25314038 acaacactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaat 25314090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 40991038 - 40990971
Alignment:
Q  53 gctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagc 120  Q
    ||||||||| ||||||| |||||||| ||||||| || |||||||||||||| ||||| || ||||||    
T  40991038 gctatagcaccactatacccactatttgacaacattttgtactaaatagcgtgtcacagaagaatagc 40990971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 37056427 - 37056370
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaa 131  Q
    ||||| ||||||| ||||||||||| |||||| |||  ||||||||||||||||||||    
T  37056427 ctatttgacaacatttcgtactaaacagcgtaccacggaacaatagcaatttgttcaa 37056370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 41015010 - 41015063
Alignment:
Q  80 gacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||||| |||||||||||| ||||||  |||||||||| |||||||||||    
T  41015010 gacaacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaat 41015063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 41894477 - 41894418
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||| ||| ||||||||||||  || ||||||| ||||||||||||||    
T  41894477 ctatttgacaacactttgtagtaaatagcgtattgcagaacaataacaatttgttcaaat 41894418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 2643930 - 2643872
Alignment:
Q  75 tattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||| |||||||||||||||| ||||||||||  || ||||||| | ||||||||||||    
T  2643930 tatttgacaacacttcgtacttaatagcgtattccagaacaataacgatttgttcaaat 2643872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 9131000 - 9130960
Alignment:
Q  93 actaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||| |||| |||||||| ||||||||||||||||||||||    
T  9131000 actatatagagtatcacagaacaatagcaatttgttcaaat 9130960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 13485412 - 13485309
Alignment:
Q  30 ttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttc 129  Q
    |||||||||| |||||||| || ||| ||||    ||||||||| |||| ||||||||||| ||||||||| |||||| |  || ||||||||||||||     
T  13485412 ttcaaattttcctatgctatagtgctttagcgctgctataaccattatttgacaacacttcctactaaataccgtatcgcggaataatagcaatttgttg 13485313  T
Q  130 aaat 133  Q
    ||||    
T  13485312 aaat 13485309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 120
Target Start/End: Complemental strand, 34417437 - 34417347
Alignment:
Q  30 ttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagc 120  Q
    |||||||| ||||||||||| | ||||||||| ||| ||| |  ||||| |||||||||| ||||||||||||| ||| |  |||||||||    
T  34417437 ttcaaattctgctatgctaccgtgctatagcaccacaatagcggctatttgacaacactttgtactaaatagcggatcgcggaacaatagc 34417347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 13298591 - 13298530
Alignment:
Q  72 cactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||||| |||| ||||| |||||||||||| ||||||| ||||||||  ||||||||||||    
T  13298591 cactatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaat 13298530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 55314547 - 55314497
Alignment:
Q  83 aacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||||| ||||||| |||| |||| || ||||||||||||||||||||||    
T  55314547 aacactttgtactaattagcatatcgcagaacaatagcaatttgttcaaat 55314497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 31675048 - 31675093
Alignment:
Q  80 gacaacacttcgtactaaatagcgtatcacaaaacaatagcaattt 125  Q
    ||||||| || |||||||||| |||||||||| |||||||||||||    
T  31675048 gacaacattttgtactaaataacgtatcacaagacaatagcaattt 31675093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 30617249 - 30617328
Alignment:
Q  53 gctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||||||||| ||||  ||||||||  |||| | || ||||||| |||||||||||| |||| |||| ||||||||||||    
T  30617249 gctatagcatcgctattgccactatttcacaatattttgtactaa-tagcgtatcacagaacactagcgatttgttcaaat 30617328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 34581649 - 34581593
Alignment:
Q  64 actataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagc 120  Q
    |||||| || ||||| ||||||| || |||||||||||||||||||  |||||||||    
T  34581649 actatagccgctatttgacaacattttgtactaaatagcgtatcacggaacaatagc 34581593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 25252099 - 25252041
Alignment:
Q  75 tattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||| ||||||| || ||||||||||||||||||| |||||| ||| ||||||||||||    
T  25252099 tattagacaacattttgtactaaatagcgtatcacgaaacaagagcgatttgttcaaat 25252041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 43307607 - 43307673
Alignment:
Q  53 gctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatag 119  Q
    ||||||||  |||||||||||||||   |||||| || |||||||| ||||||||||||||||||||    
T  43307607 gctatagcgccactataaccactatctaacaacattttgtactaaacagcgtatcacaaaacaatag 43307673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 51295745 - 51295684
Alignment:
Q  71 ccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaa 132  Q
    |||||| ||||||||| || ||||||||||||||||||| |||||||| | ||||| |||||    
T  51295745 ccactactcgacaacattttgtactaaatagcgtatcacgaaacaataacgatttgatcaaa 51295684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 14200056 - 14200000
Alignment:
Q  77 ttcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||||||||||| |||| ||||||| |||| || |||| ||||| |||||||||||    
T  14200056 ttcgacaacactttgtaccaaatagcatatcgcagaacattagcagtttgttcaaat 14200000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 39551013 - 39550956
Alignment:
Q  63 cactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagc 120  Q
    ||||||| || ||||| ||||||||||| |||| ||||| ||||||||||||||||||    
T  39551013 cactatagccgctatttgacaacacttcatactcaatagtgtatcacaaaacaatagc 39550956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 6895859 - 6895807
Alignment:
Q  82 caacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaatc 134  Q
    |||||||| ||||||||||||||||||||||  |||| |||||| ||||||||    
T  6895859 caacactttgtactaaatagcgtatcacaaattaataccaatttattcaaatc 6895807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 26273040 - 26273099
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    ||||| |||||||||| |||||||| ||||||||||| ||||||||  |||| |||||||    
T  26273040 ctattggacaacactttgtactaaacagcgtatcacagaacaatagtgatttattcaaat 26273099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 29749325 - 29749222
Alignment:
Q  30 ttcaaattttgctatgctacagcgctatagcatcactataaccactattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttc 129  Q
    |||||||||||||||||||||| ||||||||    |||||||  |||||  |||||||||  |||||  || | |||||||||||||||   ||||||||    
T  29749325 ttcaaattttgctatgctacagtgctatagcgctgctataactgctatttaacaacactttttactagttaacatatcacaaaacaataatgatttgttc 29749226  T
Q  130 aaat 133  Q
    ||||    
T  29749225 aaat 29749222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 34297893 - 34297935
Alignment:
Q  91 gtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||||||||||||| |||||||||||||||||  |||||||    
T  34297893 gtactaaatagcgtattacaaaacaatagcaattcattcaaat 34297935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 5510148 - 5510087
Alignment:
Q  73 actattcgacaacacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaatc 134  Q
    |||||| |||||||||| ||||||||| |||||| | | ||||| ||||||||||| |||||    
T  5510148 actatttgacaacactttgtactaaatcgcgtatgatagaacaaaagcaatttgttgaaatc 5510087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 18737742 - 18737693
Alignment:
Q  84 acacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||| | |||||||||| |||| | |||||||||||||||||||||||    
T  18737742 acacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaat 18737693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 43876613 - 43876569
Alignment:
Q  74 ctattcgacaacacttcgtactaaatagcgtatcacaaaacaata 118  Q
    ||||| |||||||||  |||||||||||||||||| |||||||||    
T  43876613 ctatttgacaacactctgtactaaatagcgtatcataaaacaata 43876569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 4441 - 4392
Alignment:
Q  84 acacttcgtactaaatagcgtatcacaaaacaatagcaatttgttcaaat 133  Q
    |||||| | |||||||||| |||| | |||||||||||||||||||||||    
T  4441 acacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaat 4392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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