View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_70 (Length: 249)
Name: NF20058_high_70
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_70 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 125722 - 125963
Alignment:
| Q |
1 |
tccttcgtattaatttcaagatataatgctcaactcatgttgtgttacttacatgatccaaaattactaacaagagataaaatgctacagatgttacttt |
100 |
Q |
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| T |
125722 |
tccttcgtattaatttcaagatataatgcgcaactcatgttgtgttacttacatgatccaaaattactaacaagagataaaatgctacatatgttacttt |
125821 |
T |
|
| Q |
101 |
cttcaccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaagcttttcttct-attcatttcaacatacatttcgtca |
199 |
Q |
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| T |
125822 |
cttcaccttcaatttcgaatattcatgtttatcatgcttctttcactgcactcatttcgacaaccttttcttctaattcatttcaacgtacatttcgtca |
125921 |
T |
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| Q |
200 |
atcaatggtttctaataacaaatacaactcttaagtattatc |
241 |
Q |
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| T |
125922 |
atcaatggtttctaataacaaatacaactcttaagtattatc |
125963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 4412707 - 4412648
Alignment:
| Q |
152 |
tcatttcgacaagcttttcttctattcatttcaacatacatttcgtcaatcaatggtttc |
211 |
Q |
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| T |
4412707 |
tcatttcgacaagcttttcttctattcatttcagcatacatttcctcaatcaatggtttc |
4412648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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