View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_high_73 (Length: 239)
Name: NF20058_high_73
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_73 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7026203 - 7026391
Alignment:
| Q |
1 |
caatcaataaacataagagaatattgtccacactatcttgttttataattttgaaaagcattttcaattagactttgctttcattatttattaaaatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7026203 |
caatcaataaacataagagaatattgtccacactatcttgttttataattttgaaaagcattttcaattagactttgctttcattatttattaaaatgaa |
7026302 |
T |
|
| Q |
101 |
ttcttcctaatttgttttcaataactctaccttctctctatcgcaaatattcatttccttgttagcagaatttaaaatcaacataaatt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7026303 |
ttcttcctaatttgttttcaataactctaccttctctcgatggcaaatattcatttcctcgttagcagaatttaaaatcaacataaatt |
7026391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University