View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_76 (Length: 235)
Name: NF20058_high_76
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1255950 - 1256173
Alignment:
| Q |
1 |
ccagcaaattatttaagacatggaaaaggcgaaaattcggatttagcaacatgggtgaattcagttgtaagggaagaatggacaggtgaagtgtttgata |
100 |
Q |
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| T |
1255950 |
ccagcaaattatttaagacatggaaaaggcgaaaattccgatttagcaacatgggtgaattcagttgtaagggaagaatggacaggtgaagtgtttgata |
1256049 |
T |
|
| Q |
101 |
agaatataatggggacaagaaatggtgaaggtgagatgttgaagcttttgaggattggaatgtattgttgtgagtggagtgttgagagaagatgggattg |
200 |
Q |
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| T |
1256050 |
agaatataatggggacaagaaatggtgaaggtgagatgttgaagcttttgaggattggaatgtactgttgtgaatggagtgttgagagaagatgggattg |
1256149 |
T |
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| Q |
201 |
gaaagaagctttggataagattga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
1256150 |
gaaagaagctttggataagattga |
1256173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 8110535 - 8110574
Alignment:
| Q |
61 |
tcagttgtaagggaagaatggacaggtgaagtgtttgata |
100 |
Q |
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| T |
8110535 |
tcagttgtaagggaagaatggacaggtgaagtgtttgata |
8110574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 36126150 - 36126203
Alignment:
| Q |
127 |
gaaggtgagatgttgaagcttttgaggattggaatgtattgttgtgagtggagt |
180 |
Q |
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| T |
36126150 |
gaaggtgagatgttgaagctgttgaggattggaatgagttgttgtgaatggagt |
36126203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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