View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_78 (Length: 234)
Name: NF20058_high_78
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 214
Target Start/End: Complemental strand, 35626037 - 35625852
Alignment:
| Q |
29 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
128 |
Q |
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| T |
35626037 |
caaaatcttatcatcatagatttatcttatctttagttcttcttatattcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggttt |
35625938 |
T |
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| Q |
129 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaacc |
214 |
Q |
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| T |
35625937 |
aattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaacc |
35625852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35626258 - 35626221
Alignment:
| Q |
1 |
ggtttctagggttgaataagccataacacaaaatctta |
38 |
Q |
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| T |
35626258 |
ggtttctagggttgaataagccataacacaaaatctta |
35626221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 214
Target Start/End: Original strand, 4235404 - 4235523
Alignment:
| Q |
95 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
194 |
Q |
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| T |
4235404 |
attgggcaaatttagaagcacttcctcttagtttgatacttgacaagttagaagaacacatatatcatgtttggtttggtgctgtgtgcaagagttggcg |
4235503 |
T |
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| Q |
195 |
atcaattgcaaagtttaacc |
214 |
Q |
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| T |
4235504 |
atcaattgcaaagtttaacc |
4235523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 49149524 - 49149663
Alignment:
| Q |
75 |
attcaacagaatggaaccagattgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggt |
174 |
Q |
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| T |
49149524 |
attcaacacaatggagagagattgggtaaatttaggagcaattcctcttggtttggttcttgacatgttagaagaacacatagatcatgtttggtttggt |
49149623 |
T |
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| Q |
175 |
gccgtgtgcaagaactggcgatcaattgcaaagtttaacc |
214 |
Q |
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| T |
49149624 |
gctgtgtgcaagagttggcgatcaattgcaaagcttaacc |
49149663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 49144997 - 49145113
Alignment:
| Q |
95 |
attgggaaaatttagaagcacttgcactaggtttaattcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcg |
194 |
Q |
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|||||| |||||||||||| ||||| || ||| |||||||||||||||||||||| |||||| |||||| ||| ||||| |||||||||| ||||| |
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| T |
49144997 |
attgggcaaatttagaagcccttgctcttaatttgattcttgacaagttagaagaacacatagattatgtttcgtttggtgctgtgtgcaagacttggcg |
49145096 |
T |
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| Q |
195 |
atcaattgcaaagttta |
211 |
Q |
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| T |
49145097 |
atcaattgcaaagttta |
49145113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 28614673 - 28614749
Alignment:
| Q |
138 |
caagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaacc |
214 |
Q |
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| T |
28614673 |
caagttagaagaacacatagatcatgttaggttcagtgtcgtgtgcaagacttggcgatcagttgcaaagcttaacc |
28614749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Complemental strand, 28613035 - 28612952
Alignment:
| Q |
131 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaacc |
214 |
Q |
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||||||||||||| ||||||| |||||||||||| |||| | || ||||||||||| |||| |||| |||||||| |||||| |
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| T |
28613035 |
ttcttgacaagttggaagaacacatagatcatgttaggtttgctgtcgtgtgcaagacttggctatcagttgcaaagcttaacc |
28612952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 29269810 - 29269893
Alignment:
| Q |
131 |
ttcttgacaagttagaagaacgaatagatcatgtttggttcggtgccgtgtgcaagaactggcgatcaattgcaaagtttaacc |
214 |
Q |
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|||||||| |||| ||||||| |||||||||||| |||| |||| |||||||||| || | ||||||||||||| |||||| |
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| T |
29269810 |
ttcttgacgagttggaagaacacatagatcatgttaggtttggtgtggtgtgcaagagttgcctatcaattgcaaagcttaacc |
29269893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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