View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_high_8 (Length: 595)
Name: NF20058_high_8
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 26 - 543
Target Start/End: Original strand, 14630002 - 14630532
Alignment:
| Q |
26 |
actattgtgttttaaaagtcgtgtttagagattttatataaagcagaagctagtataattatgaataacactttgtgttgacaaaggtagttatagcgtc |
125 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14630002 |
actattgtgtcttaaaagtcgtgtttagagattttatataaagcagaagctagtataattatgaataacactttgtattgacaaaggtagttatagcgtc |
14630101 |
T |
|
| Q |
126 |
aattttgttttaaaaactactcaaagtagcttctcaatagaatcagaaatctaattcttctcaaaagcttaaacaaaacacactttgaaatttttagaaa |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14630102 |
aattttgttttaaaaactactgaaagtagcttctcaatagaatcagaaatctaattcttttcaaaagcttaaacaaaacacactttgaaatttttagaaa |
14630201 |
T |
|
| Q |
226 |
gtgannnnnnngtaagataaaagttgattca--gaat-----------caagcaagcaaagtccatgaactgaaaaatctacaaggacggtaaaattttt |
312 |
Q |
| |
|
|||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||| |||| ||||| |
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| T |
14630202 |
gtgatttttttgtaagataaaagttgattctttgaatatatgctttcacaatcaagcaaagtccatgaactgaaaaatctacaagaacgttaaatttttt |
14630301 |
T |
|
| Q |
313 |
gcaataagaaagtcataacattgcacacacaagcataaaagtaatacctcagttttggaagaaacattcagcttctcctcaaatgtctgtactaattgaa |
412 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14630302 |
gcaataagaaagtcacaacattgcacacacaagcataaaagtaatacctcagttttggaagaaacattcagcttctcctcaaatgtctgtactaattgaa |
14630401 |
T |
|
| Q |
413 |
caagcttagggaaacttgatttgtcattaagatgatcatgcttgataaactcttccaagctgcatcgaatatattacatttacacatatggtagatcatg |
512 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
14630402 |
caagcttagggaaacttgatttgtcattaagatggccatgcttgataaactcttccaagctgcatcaaatatattacatttacacagatggtagatcatg |
14630501 |
T |
|
| Q |
513 |
tcagaatattgaagagcttcagaaaatgtta |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
14630502 |
tcagaatattgaagagcttcagaaaatgtta |
14630532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 24 - 529
Target Start/End: Original strand, 16640724 - 16641242
Alignment:
| Q |
24 |
ttactattgtgttttaaaagtcgtgtttagagattttatataaagcagaagctagtata--attatgaataacactttgtgttgacaaaggtagttatag |
121 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
16640724 |
ttactattgt-ttttaaaagtcgtgttcagagattttatataaatcggaagctagtatataattatgaataacactttgtattgacaaaggtagttatag |
16640822 |
T |
|
| Q |
122 |
cgtcaattttgttttaaaaactactcaaagtagcttctcaatagaatcagaaatctaattcttctcaaaagcttaaacaaaacacactttgaaattttta |
221 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| |
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|
| T |
16640823 |
cg-caattttgttttaaaaactactcaaagtagcttctcaatataatcagaaatccaattcttttcaaaagcttaaacaagacacactttgaaattttta |
16640921 |
T |
|
| Q |
222 |
gaaagtgannnnnnngtaagataaaagttgattca--gaat-----------caagcaagcaaagtccatgaactgaaaaatctacaaggacggtaaaat |
308 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
16640922 |
gaaagtgatttttttgtaagttaaaagttgattctttgaatatatgcttacgcaaacaagcaaagtccatgaactgaaaaatctacaagaacgataaaat |
16641021 |
T |
|
| Q |
309 |
ttttgcaataagaaagtcataacattgcacacacaagcataaaagtaatacctcagttttggaagaaacattcagcttctcctcaaatgtctgtactaat |
408 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
16641022 |
ttttgcaattagacagtcataacattgcacgcacaagcgtaaaagtaatacctcagttttggaagaaacattcactttctcctcaaatgtttgtactaat |
16641121 |
T |
|
| Q |
409 |
tgaacaagcttagggaaacttgatttgtcattaagatgatcatgcttgataaactcttccaagctgcatcgaatatattacatttacacatatggtagat |
508 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| ||||| |||| |||||||||| ||||| |||| ||||||||||||| ||| ||||||||| |
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|
| T |
16641122 |
tgagcaagcttagggaaacttgatttgtcagtaagatgaccatgcctgattaactcttccatgctgcgtcgattatattacatttaaacagatggtagat |
16641221 |
T |
|
| Q |
509 |
catgtcagaatattgaagagc |
529 |
Q |
| |
|
|| ||||||||| |||||||| |
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|
| T |
16641222 |
caagtcagaatagtgaagagc |
16641242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 288 - 579
Target Start/End: Original strand, 16632097 - 16632388
Alignment:
| Q |
288 |
aatctacaaggacggtaaaatttttgcaataagaaagtcataacattgcacacacaagcataaaagtaatacctcagttttggaagaaacattcagcttc |
387 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16632097 |
aatctacaagaacgataaaacttttgcaataagaaagtcataacattgcacacacaagcgtaaaagtaatacctcagttttggaagaaacattcagcttc |
16632196 |
T |
|
| Q |
388 |
tcctcaaatgtctgtactaattgaacaagcttagggaaacttgatttgtcattaagatgatcatgcttgataaactcttccaagctgcatcgaatatatt |
487 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||| |||||| |
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|
| T |
16632197 |
tcctcaaatgtttgtactaattgaacaagcttagggaaacttgatttgtctttaagatgaccatgcttgattaactcttccaagctgcatcgattatatt |
16632296 |
T |
|
| Q |
488 |
acatttacacatatggtagatcatgtcagaatattgaagagcttcagaaaatgttacaaacataaagaattcaaagtttttataagtaaaag |
579 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16632297 |
acatttaaacagatggtagatcatgtcagaatattgaagagcttcagaaaatgttgtaaacataaagaattcaaagtttttataagtaaaag |
16632388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 16631955 - 16632100
Alignment:
| Q |
24 |
ttactattgtgttttaaaagtcgtgtttagagattttatataaagcagaagctagtataattatgaataacactttgtgttgacaaaggtagttatagcg |
123 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
16631955 |
ttactattatgttttaaaagtcgtgtttagagattttatataaagcagaagctagtgtaattatgaataccactttgtattgacaaaggtagttatagcg |
16632054 |
T |
|
| Q |
124 |
tcaattttgttttaaaaactactcaaagtagcttctcaatagaatc |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16632055 |
tcaattttgttttaaaaactactcaaagtagcttctcaatataatc |
16632100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 16619497 - 16619666
Alignment:
| Q |
55 |
gattttatataaagcagaagctagtataattatgaataacactttgtgttgacaaaggtagttatagcgtcaattttgttttaaaaactactcaaagtag |
154 |
Q |
| |
|
|||||||||||||||||||| |||||| || || |||||||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
16619497 |
gattttatataaagcagaagt--gtataactacaaaaaacactttgtatcgacgaaggtagttatagcatcaattttgttttaaaaactactcaaagtag |
16619594 |
T |
|
| Q |
155 |
cttctcaatagaatcagaaatctaattcttctcaaaagcttaaacaaaacacactttgaaatttttagaaag |
226 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||| |||| ||||||| | ||||||||| |
|
|
| T |
16619595 |
cttctcaatataatcagaaatctaattcttttcaaaagcttaaacctgacacgctttgaattctttagaaag |
16619666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 569
Target Start/End: Original strand, 16619938 - 16620001
Alignment:
| Q |
505 |
agatcatgtcagaatattgaagagcttcagaaaatgttacaaacataaagaattcaaagttttta |
569 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||| | || |||||||||||||| |||||||||| |
|
|
| T |
16619938 |
agataatgtcagaatattgaagaggttcctaaaa-gctataaacataaagaattaaaagttttta |
16620001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 38880384 - 38880501
Alignment:
| Q |
33 |
tgttttaaaagtcgtgtttagagattttatataaagcagaagctagtataattatgaataacactttgtgttgacaaaggtagttatagcgtcaattttg |
132 |
Q |
| |
|
|||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||| | ||| || |||||| |||| ||| ||||| |
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|
| T |
38880384 |
tgttttcaaagttatgtttataaattttatataaagcagaagctagtataattatgaaaaacactttgtatcgacgaaagtagttttagcttcagttttg |
38880483 |
T |
|
| Q |
133 |
ttttaaaaactactcaaa |
150 |
Q |
| |
|
|| | |||| |||||||| |
|
|
| T |
38880484 |
ttctgaaaaatactcaaa |
38880501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 482 - 569
Target Start/End: Original strand, 38880759 - 38880845
Alignment:
| Q |
482 |
tatattacatttacacatatggtagatcatgtcagaatattgaagagcttcagaaaatgttacaaacataaagaattcaaagttttta |
569 |
Q |
| |
|
||||||||||||| ||| ||| |||||||||||||||||||||| ||||||| |||| |||| |||||||||||||| ||||||||| |
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|
| T |
38880759 |
tatattacatttaaacaaatgatagatcatgtcagaatattgaacagcttcataaaa-gttataaacataaagaattagaagttttta |
38880845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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