View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_high_82 (Length: 216)
Name: NF20058_high_82
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_high_82 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 42552092 - 42551908
Alignment:
| Q |
15 |
aaaattcaaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaac |
114 |
Q |
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| T |
42552092 |
aaaattcaaatttaattagtaacaagtaaactttacagttcaatatagtgtgtatgtatgtattgcaaataattttgttaaacaaacctgacaaatgaac |
42551993 |
T |
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| Q |
115 |
atttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgcattac |
199 |
Q |
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| T |
42551992 |
atttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgcattac |
42551908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 42518048 - 42518125
Alignment:
| Q |
100 |
acctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaa |
177 |
Q |
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| T |
42518048 |
acctgacaaataaacatttgagctcctccttctaagaatagagtacgtctcccaaacttatcaacagtggcaattgaa |
42518125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 18234198 - 18234301
Alignment:
| Q |
96 |
acaaacctgacaaatgaacatttgaatacctccttcaatgaaaagagttcttcttccaaatttatcaacagtagcaattgaaacaagagtggcgagtgca |
195 |
Q |
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||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||| || | |||||| ||||| |
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| T |
18234198 |
acaaacctgacaaataaacatttgaataccgccttctatgaaaagagttcttcttccaaatttatcaacagtggcgattgatacgaaagtggcaagtgcg |
18234297 |
T |
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| Q |
196 |
ttac |
199 |
Q |
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|||| |
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| T |
18234298 |
ttac |
18234301 |
T |
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