View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_high_9 (Length: 544)

Name: NF20058_high_9
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_high_9
NF20058_high_9
[»] chr8 (5 HSPs)
chr8 (1-281)||(45093746-45094020)
chr8 (32-281)||(11072084-11072333)
chr8 (394-525)||(45094113-45094244)
chr8 (356-405)||(5769489-5769538)
chr8 (356-404)||(24471860-24471908)
[»] chr3 (3 HSPs)
chr3 (1-281)||(37252436-37252718)
chr3 (356-405)||(25437274-25437323)
chr3 (356-404)||(37252313-37252361)
[»] chr7 (1 HSPs)
chr7 (349-393)||(8026637-8026681)
[»] chr4 (2 HSPs)
chr4 (356-404)||(8371080-8371128)
chr4 (56-84)||(32510809-32510837)
[»] chr2 (1 HSPs)
chr2 (356-404)||(24125397-24125445)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 45093746 - 45094020
Alignment:
Q  1 catgccggtaaattaggcctatatatataataaaaaacactataaagttcagacgcgttgatactgataataatttaagaaaatggtaaaattcattatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||    
T  45093746 catgccggtaaattaggcctatatatataataaaaaacactataaagttcagacgcgttgacactaataataatttaaaaaaatggtaaaattcattatt 45093845  T
Q  101 tattttaagcgttgatgttgtgttggtattggacatgatacatatttgacgttgggacacaccaatatgagaagtatgtgcttcatggaaagcactagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45093846 tattttaagcgttgatgttgtgttggtattggacatgata------tgacgttgggacacaccaatatgagaagtatgtgcttcatagaaagcactagaa 45093939  T
Q  201 aagcatgcaaaatgtataatctcttcnnnnnnnaaccaattcttattcatatatttttcgcaatgtactaacatgaactcc 281  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45093940 aagcatgcaaaatgtataatctcttcattttttaaccaattcttattcatatatttttcgcaatgtactaacatgaactcc 45094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 32 - 281
Target Start/End: Complemental strand, 11072333 - 11072084
Alignment:
Q  32 aaaaaacactataaagttcagacgcgttgatactgataataatttaagaaaatggtaaaattcattatttattttaagcgttgatgttgtgttggtattg 131  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11072333 aaaaaacactataaagttcagacgcgttgacactgataataatttaagaaaatggtaaaattcattatttaatttaagcgttgatgttgtgttggtattg 11072234  T
Q  132 gacatgatacatatttgacgttgggacacaccaatatgagaagtatgtgcttcatggaaagcactagaaaagcatgcaaaatgtataatctcttcnnnnn 231  Q
    ||||||||||| || |||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||         
T  11072233 gacatgatacacatctgacgttgggacacgccaatatgagaaatatgtgcttcatagaaagcactagaaaagcatgcaaaatgtataatctcttcttttt 11072134  T
Q  232 nnaaccaattcttattcatatatttttcgcaatgtactaacatgaactcc 281  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11072133 ttaaccaattcttattcatatatttttcgcaatgtactaacatgaactcc 11072084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 394 - 525
Target Start/End: Original strand, 45094113 - 45094244
Alignment:
Q  394 caagttctagtaaataaaatgattgtataccatagcgccatagtagtctacatgtagtctacaatttgaaactcacaaaaactactcacaagaaaaatgg 493  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45094113 caaggtctagtaaataaaatgattgtataccgtagcgccatagtagtctacatgtagtctacaatttgaaactcacaaaaactgctcacaagaaaaatgg 45094212  T
Q  494 ccttcatattgcacaatcaagagtgaatacca 525  Q
    ||||||||||||||||||||||||||||||||    
T  45094213 ccttcatattgcacaatcaagagtgaatacca 45094244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 5769538 - 5769489
Alignment:
Q  356 tatttgccgtcgatatgacccgtgctgccgcatgggtgcaagttctagta 405  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| |||||||    
T  5769538 tatttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagta 5769489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 24471860 - 24471908
Alignment:
Q  356 tatttgccgtcgatatgacccgtgctgccgcatgggtgcaagttctagt 404  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| ||||||    
T  24471860 tatttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagt 24471908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 37252718 - 37252436
Alignment:
Q  1 catgccggtaaattaggcctatatatata--ataaaaaacactataaagttcagacgcgttgatactgataataatttaagaaaatggtaaaattcatta 98  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  37252718 catgccggtaaattaggcctatatatatataataaaaaacactataaagttcagacgcgttgacactgataataatttaagaaaatggtaaaattcattg 37252619  T
Q  99 tttattttaagcgttgatgttgtgttggtattggacatgatacatatttgacgttgggacacaccaatatgagaagtatgtgcttcatggaaagcactag 198  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  37252618 tttattttaagcgttgatgttgtgttggtattagacatgatacatatctgacgttgggacacaccaatatgagaagtatgtgcttcataaaaagcactag 37252519  T
Q  199 aaaagcatgcaaaatgtataatctcttcnnnnnnnaaccaattcttattcatatatttttcgcaatgtactaacatgaactcc 281  Q
    |||| ||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37252518 aaaaacatgcaatatgtataatctcttctttttttaaccaattcttattcatatatttttcgcaatgtactaacatgaactcc 37252436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 25437274 - 25437323
Alignment:
Q  356 tatttgccgtcgatatgacccgtgctgccgcatgggtgcaagttctagta 405  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| |||||||    
T  25437274 tatttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagta 25437323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 37252361 - 37252313
Alignment:
Q  356 tatttgccgtcgatatgacccgtgctgccgcatgggtgcaagttctagt 404  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| ||||||    
T  37252361 tatttgccgtcaatatgacccgtgcagcagcacgggtgcaaggtctagt 37252313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 8026681 - 8026637
Alignment:
Q  349 aatgttttatttgccgtcgatatgacccgtgctgccgcatgggtg 393  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||    
T  8026681 aatgttctatttgccgtcaatatgacccgtgctgccgcacgggtg 8026637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 8371128 - 8371080
Alignment:
Q  356 tatttgccgtcgatatgacccgtgctgccgcatgggtgcaagttctagt 404  Q
    ||||||||||| ||||||||||||| || ||| ||||||||| ||||||    
T  8371128 tatttgccgtcaatatgacccgtgcggcagcacgggtgcaaggtctagt 8371080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 84
Target Start/End: Complemental strand, 32510837 - 32510809
Alignment:
Q  56 cgttgatactgataataatttaagaaaat 84  Q
    |||||||||||||||||||||||||||||    
T  32510837 cgttgatactgataataatttaagaaaat 32510809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 24125397 - 24125445
Alignment:
Q  356 tatttgccgtcgatatgacccgtgctgccgcatgggtgcaagttctagt 404  Q
    ||||||||||||||||||| ||||| || ||| ||||||||| ||||||    
T  24125397 tatttgccgtcgatatgacacgtgcggcagcacgggtgcaaggtctagt 24125445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University