View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_1 (Length: 817)
Name: NF20058_low_1
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 663; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 40 - 808
Target Start/End: Original strand, 45542323 - 45543087
Alignment:
| Q |
40 |
cttcccttaatacaccagaataaagatatgaaaacacgaaaataacaccatgccaaagtatgaatttcacactattgattaaaataaaaatgcatagtac |
139 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45542323 |
cttcccttaatacaccagaataaagatatgaaaacacgaaaataacaccatgccaaagtatgaatttcacactattgattaaaataaaaatgcacagtac |
45542422 |
T |
|
| Q |
140 |
aatcatatatcaaaatacattttttaaaaattttatctcataacc-acagttttacaacactagcatatagtattgtcaaaataaaataaacaatagtaa |
238 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542423 |
aatcatatatcaa--tacattttttaaaaatcttatctcataacgtacagctttacaacactagcatatagtattgtcaaaataaaataaacaatagtaa |
45542520 |
T |
|
| Q |
239 |
tttccacagccatacaa---acttacacattttatatataacaatgaacaaactatctaatttacaagtaacagaatcatttcaaaaaattattatttat |
335 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
45542521 |
tttccacagccatacaacaaacttacacattttata-acaacaatgaacaaactatctaatt-acaagtaacagaatcacttcaaaaaattattatttat |
45542618 |
T |
|
| Q |
336 |
agagaaatttattctggtatcttgatcttcaattggattactcatgtgtccttccttcattcatccacacctttgccaacttgttccacttctgcaacat |
435 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45542619 |
agagaaatttattctggtatcttgatcttcagttggattactcatgtgtccttccttca----tccacacctttgccaacttgttccacttctgcaacat |
45542714 |
T |
|
| Q |
436 |
gatctttattctttgataagtcttcaccaatgcctacacctataagtataacaacaacatcaaaatcagaatcatatcaaatatattatataacacaaca |
535 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542715 |
gatctttattctttgataagtcttcaccaatgcctacacctataagtataacaacaacatcaaaatcagaatcatatcaaatatattatataacacaaca |
45542814 |
T |
|
| Q |
536 |
ttatgcaaaatgtactagagaaaaagaattaccctgtggtgattgattctcctcaggtttagcaaaccaagatccataataatccttaaccctgtcaacc |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542815 |
ttatgcaaaatgtactagagaaaaagaattaccctgtggtgattgattctcctcaggtttagcaaaccaagatccataataatccttaaccctgtcaacc |
45542914 |
T |
|
| Q |
636 |
attcctttgcctggactattcgcattgctctcttcaagaactttctctgacttctcatcctcactagccaatattccatcttcttttttcaatggctctt |
735 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542915 |
attccttttcctgaactattcgcattgctctcttcaagaactttctctgacttctcatcctcactagccaatattccatcttcttttttcaatggctctt |
45543014 |
T |
|
| Q |
736 |
ctttccctttatgtaaagcttctgaaatcacctcagaaagtgccttatcttcttcactaggcctttgcttctc |
808 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
45543015 |
ctttccctttatgtaaagcttctgaaaccacctcagaaagtgccttatcttcttcactaggccttagcttctc |
45543087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 301 - 808
Target Start/End: Original strand, 45529686 - 45530196
Alignment:
| Q |
301 |
aagtaacagaatcatttcaaaaaattattatttatagagaaatttattctggtatcttgatcttcaattggattactcatgtgtccttccttcattcatc |
400 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| | |
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|
| T |
45529686 |
aagtaacagaataacttcaaaaaattattatttatagagaaatttattctggtaacttgatcttcaattgaattactcatgtatccttccttcat----c |
45529781 |
T |
|
| Q |
401 |
cacacctttgccaactt------gttccacttctgcaacatgatctttattctttgataagtcttcaccaatgcctacacctataagtataacaacaaca |
494 |
Q |
| |
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||||||| ||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||| || |
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| T |
45529782 |
cacacctatgccagcttcagcttgttccacttctgcaacagagtctttattctttgataagtcttcaccaattcctacacctataaggataacaacagca |
45529881 |
T |
|
| Q |
495 |
tcaaaatcagaatcatatcaaatatattatataacacaa-cattatgcaaaatgtactagagaaaaagaattaccctgtggtgattgattctcctcaggt |
593 |
Q |
| |
|
||||||| |||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45529882 |
tcaaaattagaatcatatcatatatattatgtaacacaaacattatgcaaaatgtactagagaaaaagaattaccctgttgtgattgattctcctcaggt |
45529981 |
T |
|
| Q |
594 |
ttagcaaaccaagatccataataatccttaaccctgtcaaccattcctttgcctggactattcgcattgctctcttcaagaactttctctgacttctcat |
693 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| ||||| | ||||||| || ||||||||||||||| |||||||| ||||||||||| |
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| T |
45529982 |
ttagcaaaccaagatccataataattcttaaccctgtcaaccatgccttttcttggactagtcacattgctctcttcaaaaactttctttgacttctcat |
45530081 |
T |
|
| Q |
694 |
cctcactagccaatattccatcttcttttttcaatggctcttctttccctttatgtaaagcttctgaaatcacctcagaaagtgccttatcttcttcact |
793 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||| |||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
45530082 |
cctcactagccaatattccatcctcttttgtcaatggctcgtctttcccttcatgtaaagcttctaaaatcacctaagaaagtgccttatcttcttcact |
45530181 |
T |
|
| Q |
794 |
aggcctttgcttctc |
808 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
45530182 |
aggccttagcttctc |
45530196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 617 - 808
Target Start/End: Original strand, 45548218 - 45548409
Alignment:
| Q |
617 |
atccttaaccctgtcaaccattcctttgcctggactattcgcattgctctcttcaagaactttctctgacttctcatcctcactagccaatattccatct |
716 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||| ||||| || ||||||||| |||||||| |||| ||||||| |
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|
| T |
45548218 |
atccttaaccttgtcaaccatgccttttcctggactattcacattgctctcttcaaacactttgtcagacttctcaacctcactatccaactttccatcc |
45548317 |
T |
|
| Q |
717 |
tcttttttcaatggctcttctttccctttatgtaaagcttctgaaatcacctcagaaagtgccttatcttcttcactaggcctttgcttctc |
808 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
45548318 |
tcttttttcaatggctcttcttttcctttattcaaagtttctgaaatcacctcagaaagtgccttatcttcttcactaggctttagcttctc |
45548409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 45529373 - 45529503
Alignment:
| Q |
168 |
aattttatctcataaccacagttttacaacactagcatatagtattgtcaaaataaaataaac-----aatagtaatttccacagccatacaaacttaca |
262 |
Q |
| |
|
||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| | ||||||||||| | |
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|
| T |
45529373 |
aatttgatctcataatcacagccttacaacactagcatatagtattgtcaaaacaaaataaactagcatatagta--ttccacaccaatacaaacttata |
45529470 |
T |
|
| Q |
263 |
cattttatatataacaatgaacaaactatctaa |
295 |
Q |
| |
|
||||||| |||||| ||||||||||| ||||| |
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|
| T |
45529471 |
cattttacatataatcatgaacaaactgtctaa |
45529503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 415 - 480
Target Start/End: Original strand, 45548045 - 45548110
Alignment:
| Q |
415 |
cttgttccacttctgcaacatgatctttattctttgataagtcttcaccaatgcctacacctataa |
480 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||||||||||| ||| ||||||||| |
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|
| T |
45548045 |
cttgttccacttctccaacagattttttattctttgataagtcttcaccaattcctccacctataa |
45548110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 45528285 - 45528362
Alignment:
| Q |
68 |
tgaaaacacgaaaataacaccatgccaaagtatgaatttcacactattgattaaaataaaaatgcatagtacaatcatatat |
149 |
Q |
| |
|
||||||||||||||||| |||||| || | ||||||| ||||||||||||||||| || ||||| |||||||||||||| |
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|
| T |
45528285 |
tgaaaacacgaaaataataccatgtcata----gaatttcccactattgattaaaatagaagtgcatggtacaatcatatat |
45528362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 662 - 800
Target Start/End: Complemental strand, 7005947 - 7005809
Alignment:
| Q |
662 |
gctctcttcaagaactttctctgacttctcatcctcactagccaatattccatcttcttttttcaatggctcttctttccctttatgtaaagcttctgaa |
761 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
7005947 |
gctctcttcacacactttctctgacttctcattctcactacccaattttccatcctcttttttcaaaggctcttctttccctttatgaaaagcttctgaa |
7005848 |
T |
|
| Q |
762 |
atcacctcagaaagtgccttatcttcttcactaggcctt |
800 |
Q |
| |
|
||||||| ||| ||||| || |||||||||||||||||| |
|
|
| T |
7005847 |
atcaccttagagagtgcattgtcttcttcactaggcctt |
7005809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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