View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20058_low_11 (Length: 510)
Name: NF20058_low_11
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 179 - 500
Target Start/End: Complemental strand, 11384182 - 11383861
Alignment:
| Q |
179 |
ctatataaagttattttactaagattttgtaagtgttataagtttttacataccaagtcaaccggtttaatacaattcaatnnnnnnnttagtttttaga |
278 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11384182 |
ctatataaagttattttactaagattttataagtgttataagtttttacataccaagtcaaccggtttaatacaattcaataagaaaaatagtttttaga |
11384083 |
T |
|
| Q |
279 |
gatcgaaagatactattgagtcatcaatttcttcttacggttcaactaatgatttagtaatcttgtcggtttgatggccactttgatttttaaaactatg |
378 |
Q |
| |
|
|| | ||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
11384082 |
gaccaaaagatactattgagtcatcagactcttctcgcggttcaaccagtgatttagtaatcttgtcggtttgatgaccagtttgatttttaaaactatg |
11383983 |
T |
|
| Q |
379 |
acttattgtcgcagcgcaatgggtcgtaggtgtgtggttttcattccttgttggtggtcgaatcctacacctttgtgattctgcactggtgtgtggattt |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11383982 |
acttattgtcgcagcgcaatgggtcgtaggtgtgtggttttcattccttgttggtggtcgaatcctacacctttgtgattctgcactggtgtgtggattt |
11383883 |
T |
|
| Q |
479 |
ttagttcggattgtgatctgtg |
500 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
11383882 |
ttagttcggattgtgatttgtg |
11383861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 11385951 - 11385774
Alignment:
| Q |
1 |
tttacatagctatacacatattcaaattgattttaaaacattaagttgtataattttttgacaagaacattaaattttaaataatacttgctttattttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11385951 |
tttacatagctatacacatattcaaattgattttaaaacattaagttgtataattttttgacaagaacattaaattttaattaatacttgctttattttg |
11385852 |
T |
|
| Q |
101 |
tttataaatatacatgccttttatgaatattatattcttactttcaaaataaaaatgaaaaccaaattcttattaaat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11385851 |
tttataaatatacatgccttttatgaatattatattcttactttcaaaataaaaatgaaaaccaaattcttattaaat |
11385774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 27635546 - 27635474
Alignment:
| Q |
178 |
tctatataaagttatttt-actaagattttgtaagtgttataagt-ttttacataccaagtcaaccggtttaa |
248 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| |||||||||||| | ||||| | ||||||||||||||||||| |
|
|
| T |
27635546 |
tctatataaagttatttttattaacattttataagtgttataattgttttatagaccaagtcaaccggtttaa |
27635474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 27635727 - 27635657
Alignment:
| Q |
9 |
gctatacacatattcaaattgattttaaaacatta---agttgtataattttttgacaagaacattaaatt |
76 |
Q |
| |
|
||||||| |||||| || |||||| |||||||||| ||| ||||| ||||||||||||||||||||||| |
|
|
| T |
27635727 |
gctatacccatatttaatttgattataaaacattattaagtcgtatatttttttgacaagaacattaaatt |
27635657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University