View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_13 (Length: 490)
Name: NF20058_low_13
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 172 - 490
Target Start/End: Original strand, 47037019 - 47037338
Alignment:
| Q |
172 |
tcttgatggtccctactcataaaaaacaaatggaatggtaagctccaaaacactctttgagattgagcactactattctttcacctgtctcgctcattct |
271 |
Q |
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| T |
47037019 |
tcttgatggtccctactcataaaaaacaaatggtatggtaagctccaaaacactctttgagattgagcactactattctttcacctgtctcgctcattct |
47037118 |
T |
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| Q |
272 |
acatatcaacaactgcctcttttggtgcttatctcaatatccacttgtttttagcaaccgaatcaatgtt-aannnnnnnngtacgtttcaaactaatgc |
370 |
Q |
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| T |
47037119 |
acatatcaacaactgcctcttttggtgcttatctcaatatccacttgtttttagcaaccgaatcaatgttaaattttttttgtacgtttcaaactaatgc |
47037218 |
T |
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| Q |
371 |
cgctttgttgggccactgccgttcctatgaatcctatctttatctcttcgtcattcgttggcctcttttcacattggttaattgcatttgcacatatttt |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037219 |
cgctttgttgggccactgccgttcctatgaatcctatctttatctcttcgtcattcgttggcctcttttcacattggttaattgcatttgcacatatttt |
47037318 |
T |
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| Q |
471 |
gatcaatcatcatcaagata |
490 |
Q |
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|||| ||||||||||||||| |
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| T |
47037319 |
gatctatcatcatcaagata |
47037338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 47036851 - 47036954
Alignment:
| Q |
6 |
ggaggagcagagagcattcacatgacaaccgataaacataactgcatttatcataaatataataccgacatgactctgtaattgtgctcctgattctttt |
105 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47036851 |
ggaggagaagagagcattcacatgacaaccgataaacataactgcatttatcataaatataataccgacatgactctgtaattgtgctcctgattctttt |
47036950 |
T |
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| Q |
106 |
tcat |
109 |
Q |
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|||| |
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| T |
47036951 |
tcat |
47036954 |
T |
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