View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_14 (Length: 464)
Name: NF20058_low_14
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 59 - 449
Target Start/End: Original strand, 32211218 - 32211612
Alignment:
| Q |
59 |
ttttttaaagaaaacttagatcactatttgaaaaaatatatcttatttatcatcatatgtctattattat----ttggctcaaaccttggtcacttccat |
154 |
Q |
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| T |
32211218 |
ttttttaaagaaaacttagatcactatttgaaaaaatatatcttatttatcatcatatgtctattattatttatttggctcaaaccttgatcacttccat |
32211317 |
T |
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| Q |
155 |
aatgctactggtttccatattccacataaaaaatgtgatttggagataaaatttgtggtttaggctcccaaatgcaaagaaggttcaaaatagaaaatat |
254 |
Q |
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| T |
32211318 |
aatgctactggtttccatattccacataaaaaatgtgatttggagataaaatttgtggtttaggctcccaaatgcaatgaaggttcaaaatagaaaatat |
32211417 |
T |
|
| Q |
255 |
attgcttaactacagttttagtccttatattttcactcactcacataattggttcttcttttctaaacttcaagattttggtctcttagctacgcttttg |
354 |
Q |
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| T |
32211418 |
attgcttaactacagttttagtccttatattttcattcactcacataattggttcttcttttctaaacttcaagattttagtctcttagctacgtttttg |
32211517 |
T |
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| Q |
355 |
gactcaaaagtatgtggcaagttttgaatcaacgtaaacatgacttaaaatttggtgaggtagagtcatctagatgactttaatttataggtttt |
449 |
Q |
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| T |
32211518 |
aactcaaaagtatgtggcaagttttgaatcaacgtaaacatgacttaaaatttggtgtggtagagtcatctaagtgactttaatttatagatttt |
32211612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4854821 - 4854759
Alignment:
| Q |
1 |
actgtgatgttccacagttccaatcaagaacaatcaagttgtatcatcctcataatcattttt |
63 |
Q |
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| T |
4854821 |
actgtgatgttccacagttccaatcaagaaaaatcaagctgtatcatcctcataatcattttt |
4854759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 25675467 - 25675528
Alignment:
| Q |
1 |
actgtgatgttccacagttccaatcaagaacaatcaagttgtatcatcctcataatcatttt |
62 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
25675467 |
actgtgatgttccacagttccaatcaagaaaaatcaagctgtatcatcctcataatcatttt |
25675528 |
T |
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