View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_16 (Length: 460)
Name: NF20058_low_16
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 7 - 446
Target Start/End: Complemental strand, 52686240 - 52685798
Alignment:
| Q |
7 |
ggccctaaaggtccttggccactgtttagttggcttggttaggagcttgattctaagaacaacat--tatcatgaggcataccgcaataatatgtaatag |
104 |
Q |
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| T |
52686240 |
ggccctaaaggtccttggccactgtttagctggcttggttaggagcttgattctaagaacaacatattatcatgaggcataccacaataataggtaatag |
52686141 |
T |
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| Q |
105 |
aatcttaatttggact-aactaaattgaaacacacagaaataatgtggatatgttttgtagttctcggtgttcgcactagtttggtatttttggtcaata |
203 |
Q |
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| T |
52686140 |
aatcttaattttgactgaagtaaattgaaacacacagaaataatgtggatatgttttgtagttctcggtgttcgcactagtttggtatttttggtcaata |
52686041 |
T |
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| Q |
204 |
ttttggcattaagactttgccatttgttaagaactgaagaaactatctagttaatttacgaagccagtcaattaacattctataatgggacattgatcaa |
303 |
Q |
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| T |
52686040 |
ttttggcattaagactttgccatttgttaagaactgaagaaactatctagttaatttacgaagccagtcaattaacattctataatgggacattgatcaa |
52685941 |
T |
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| Q |
304 |
attatcaactacttgtgcctagtacacccaaattttgcaaaagatcccctgtttggttttggaaataacacaactctttagaccttcaccacttttgtan |
403 |
Q |
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| T |
52685940 |
attatcaactacttgtgcctagtacacccaaattttgcaaaagaccccctgtttggctttggaaataacacaactctttagaccttcaccacttttgtat |
52685841 |
T |
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| Q |
404 |
nnnnnngttactctgcaatatgcgcaagattctgactttctct |
446 |
Q |
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| T |
52685840 |
ttttttgttactctgcaatatacgcaagattctgactttctct |
52685798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 178 - 343
Target Start/End: Complemental strand, 409616 - 409451
Alignment:
| Q |
178 |
cactagtttggtatttttggtcaatattttggcattaagactttgccatttgttaagaactgaagaaactatctagttaatttacgaagccagtcaatta |
277 |
Q |
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| T |
409616 |
cactagttcggtattttagctcactgttttggctttcaaactgtgtcattttttaagatataaagaaactttctagttaatttgcgaaaccagtaaagta |
409517 |
T |
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| Q |
278 |
acattctataatgggacattgatcaaattatcaactacttgtgcctagtacacccaaattttgcaa |
343 |
Q |
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| T |
409516 |
acattgcataatgggacattgatccaattatcaactgcttgtgctcagtacatccaacttttgcaa |
409451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 431
Target Start/End: Complemental strand, 409429 - 409351
Alignment:
| Q |
353 |
tgtttggttttggaaataacacaactctttagaccttcaccacttttgtannnnnnngttactctgcaatatgcgcaag |
431 |
Q |
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| T |
409429 |
tgtttggctttggaaatagcacagatctttagaccttcaccacttttgtatttctgtgttactctgcaatatgcgcaag |
409351 |
T |
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