View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_18 (Length: 453)
Name: NF20058_low_18
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 144 - 427
Target Start/End: Complemental strand, 31767961 - 31767678
Alignment:
| Q |
144 |
gttcactcattcaactttttctagctagtatatataagattaacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
243 |
Q |
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| T |
31767961 |
gttcactcattcaactttttctagctagtatatataagattgacaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaag |
31767862 |
T |
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| Q |
244 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaattt |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
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| T |
31767861 |
tgttactaggaagaagagattcaagatttgcaagcagggatgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcacaaattt |
31767762 |
T |
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| Q |
344 |
caagtctcatggacttaaccttaaggacttggttgttctatctggtggacacacaattggattttccaaatgcactaactttag |
427 |
Q |
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| T |
31767761 |
caagtcacatggactaaaccttaaagatttagttgttctatctggtggtcacacaattggattttccaaatgcactaactttag |
31767678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 169 - 434
Target Start/End: Complemental strand, 31761187 - 31760918
Alignment:
| Q |
169 |
tagtatatataagattaacaactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
264 |
Q |
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| T |
31761187 |
tagtatatataaccctagcaactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagatt |
31761088 |
T |
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| Q |
265 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaacct |
364 |
Q |
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| T |
31761087 |
caagatttgcaagcagggatgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaacct |
31760988 |
T |
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| Q |
365 |
taaggacttggttgttctatctggtggacacacaattggattttccaaatgcactaactttagggacagg |
434 |
Q |
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| T |
31760987 |
taaagacttagttgttctatctggtggccacacaattggattttccaaatgcactaactttagagacagg |
31760918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 187 - 427
Target Start/End: Original strand, 31749547 - 31749791
Alignment:
| Q |
187 |
caactaacaaattttgctt----caattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcaggg |
282 |
Q |
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| T |
31749547 |
caactaagaaattttgctttcatcatttaacagctgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagag |
31749646 |
T |
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| Q |
283 |
atgcagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaggacttggttgttct |
382 |
Q |
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| T |
31749647 |
atgcagcaaatacaaatcttcctcctccattctttaacttctcacaactcatcaaaaatttcaagtcacatggactaaaccttaaggacttagttgttct |
31749746 |
T |
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| Q |
383 |
atctggtggacacacaattggattttccaaatgcactaactttag |
427 |
Q |
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| T |
31749747 |
atctggtggacacacaattggattttccaaatgcactaactttag |
31749791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 186 - 427
Target Start/End: Complemental strand, 31753554 - 31753313
Alignment:
| Q |
186 |
acaactaacaaattttgcttcaattaacagttgggtggtaagcaatattggtaccaagtgttactaggaagaagagattcaagatttgcaagcagggatg |
285 |
Q |
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| T |
31753554 |
acaactaacaaattttgcatcaattaacagttgggcggtcacaaatattggtaccaagtgttactgggcagaagagattcaagatttgcaagcagagatg |
31753455 |
T |
|
| Q |
286 |
cagcaaatacaaatcttcctcctccatttttcaatttctcacaactcatcacaaatttcaagtctcatggacttaaccttaaggacttggttgttctatc |
385 |
Q |
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| T |
31753454 |
cagcaaatataaatcttccaccggcattttttaacttctcacaactcatcgcaaattttcagtctcaaggactaaaccttaaagacttagttgttctatc |
31753355 |
T |
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| Q |
386 |
tggtggacacacaattggattttccaaatgcactaactttag |
427 |
Q |
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| T |
31753354 |
tggtggtcacacaattggattttcaagatgtactaactttag |
31753313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 31768091 - 31768001
Alignment:
| Q |
14 |
ttctacaatacaagtttatagcattaccacaaccgaaactctaatttaaaaccatgtttaaatcaaactctaaatattaaagggcactcgt |
104 |
Q |
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| T |
31768091 |
ttctacaatacaagtttatagcattaccgcaaccgaaactctaatttaaaaccatgtttaaatcaaacactaaatattgaaggacactcgt |
31768001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 269
Target Start/End: Original strand, 27887869 - 27887907
Alignment:
| Q |
231 |
tattggtaccaagtgttactaggaagaagagattcaaga |
269 |
Q |
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| T |
27887869 |
tattggtaccaagtgctactaggaagaagagatgcaaga |
27887907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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