View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_22 (Length: 429)
Name: NF20058_low_22
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 2869574 - 2869924
Alignment:
| Q |
16 |
atccaacctgtcaagttacttaattaccacaactactttgttatttccaaattccaacaaggaaccatt----atagtaccatgtttcctcttttcttag |
111 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2869574 |
atccaccctgtcaagttacttaattaccaccactactttgttatttccaaattccaacaaggaaccattcattatagtaccatgtttcctcttttcttag |
2869673 |
T |
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| Q |
112 |
ttgctatatatattcaattctaaatcatcataatattcattcacctacccttgtcataactaagttttcaggttgcactgtgtatatatccacagaacaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2869674 |
ttgctatatatattcaattctaaatcatcataatattcattcacctacccttgtcataactaagttttcaggttgcactgtgtatatatccacagaacaa |
2869773 |
T |
|
| Q |
212 |
gtcatgggagaatcagaaggttccagcatcaacaaaactgaatcaccacagctacagtctcttctggaccctgttcctgaagagctttcccctgttgtgg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2869774 |
gtcatgggagaatcagaaggttccagcatcaacaaaactgaatcaccacagctacagtctcttctggaccctgttcctgaagagctttcccctgttgtgg |
2869873 |
T |
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| Q |
312 |
aaaaggaatctgaaactctaagcactatcagtatcagtcaggagcctaatc |
362 |
Q |
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||||||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
2869874 |
aaaaggattcagaaactctaagcacgatcagtatcagtcaggagcctaatc |
2869924 |
T |
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