View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_24 (Length: 419)
Name: NF20058_low_24
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 10931692 - 10931892
Alignment:
| Q |
13 |
aaaattcaacacaccagctagagcacaaaggcttcatgcatcttatactatttttgcacgaaagtcctcaaacaaataacacttcgtgcagctaatcctt |
112 |
Q |
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| T |
10931692 |
aaaattcaacacaccagctagagcacaaaggcttcatgcatcttatactatttttgcacgaaagtcctcaaacaaataacacttcgtgcagctaatcctt |
10931791 |
T |
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| Q |
113 |
tgaccttatttataaatttgtgttgttacttatcttctcataaaccatgtgactaaggttatacatatgtgcatcttaccaggattgtatgtgtcaaaat |
212 |
Q |
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| T |
10931792 |
tgaccttatttataaatttgtgttgttacttatcttcccataaaccatgtgactaaggttatacatatgtgcatcttaccaggattgtatgtgtcaaaat |
10931891 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
10931892 |
a |
10931892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 205 - 406
Target Start/End: Original strand, 10932126 - 10932323
Alignment:
| Q |
205 |
gtcaaaatattatgaacatcgttgctctgaaacctcgagcttctaagtattcctcaaagtccttcttagcttcgttcttttgttgcaccctataatttga |
304 |
Q |
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| T |
10932126 |
gtcaaaatattatgaacatcgttgctctgaaaccttaagcttctaagtattcctcaaagtccttcttagcttcgttcttttgttgcaccctataatttga |
10932225 |
T |
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| Q |
305 |
atgtggtatggttggttaatctaatgtgttcccatgtgaagttcatattttaaatctcaaccacatatcttcaaaaattaaacaagtttgaggtatacaa |
404 |
Q |
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| T |
10932226 |
atgtggta----tggttaatctaatgtgttcccatgtgaagttcatattttaaatcccaaccacataccttaacaaattaaacaagtttgaggtatacaa |
10932321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 261
Target Start/End: Original strand, 31396196 - 31396334
Alignment:
| Q |
123 |
tataaatttgtgttgttacttatcttctcataaaccatgtgactaaggttatacatatgtgcatcttaccaggattgtatgtgtc-aaaatattatgaac |
221 |
Q |
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|||||| |||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| | | |||| |||| ||||| |||||||| |
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| T |
31396196 |
tataaagttgtattgttacacatcttctgataaaccatgtgattaaggttatacatatgtgcatcttacttgaagcgtatctgtcaaaaatcttatgaac |
31396295 |
T |
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| Q |
222 |
atcgttgctctgaaacctcgagcttctaagtattcctcaa |
261 |
Q |
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| T |
31396296 |
atctttgctccaaaaccctgag-ttttaagtattcctcaa |
31396334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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