View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_low_30 (Length: 390)

Name: NF20058_low_30
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_low_30
NF20058_low_30
[»] scaffold0777 (1 HSPs)
scaffold0777 (11-374)||(5835-6193)
[»] chr5 (20 HSPs)
chr5 (11-239)||(3193437-3193662)
chr5 (14-206)||(39542402-39542589)
chr5 (126-239)||(18600482-18600595)
chr5 (48-186)||(502827-502959)
chr5 (51-239)||(18626684-18626868)
chr5 (23-156)||(36161045-36161171)
chr5 (44-187)||(32257652-32257795)
chr5 (13-152)||(12263648-12263786)
chr5 (60-225)||(25034282-25034446)
chr5 (60-132)||(18600222-18600294)
chr5 (23-239)||(20870635-20870842)
chr5 (63-156)||(3596910-3597003)
chr5 (127-235)||(27548453-27548560)
chr5 (83-158)||(37147852-37147927)
chr5 (47-145)||(16570505-16570603)
chr5 (84-153)||(8934116-8934185)
chr5 (85-154)||(10325603-10325672)
chr5 (117-187)||(11417143-11417211)
chr5 (13-75)||(7887266-7887325)
chr5 (90-181)||(16569275-16569364)
[»] chr4 (33 HSPs)
chr4 (11-239)||(2113828-2114053)
chr4 (15-155)||(29118464-29118602)
chr4 (44-236)||(15986788-15986980)
chr4 (44-239)||(3643060-3643255)
chr4 (13-154)||(23870038-23870176)
chr4 (70-226)||(5627536-5627691)
chr4 (47-154)||(36071557-36071664)
chr4 (64-238)||(25779558-25779732)
chr4 (64-185)||(20811476-20811597)
chr4 (48-172)||(7102166-7102289)
chr4 (44-155)||(12320423-12320534)
chr4 (60-185)||(29369858-29369991)
chr4 (47-154)||(43515857-43515964)
chr4 (44-153)||(7853314-7853423)
chr4 (100-185)||(48653743-48653828)
chr4 (85-212)||(375791-375917)
chr4 (44-185)||(53178768-53178907)
chr4 (240-306)||(34686606-34686672)
chr4 (89-210)||(37226298-37226419)
chr4 (83-156)||(55147668-55147741)
chr4 (86-170)||(40807830-40807914)
chr4 (81-156)||(8240886-8240961)
chr4 (281-362)||(34682400-34682481)
chr4 (13-100)||(55147880-55147964)
chr4 (240-312)||(34694538-34694610)
chr4 (23-168)||(4596445-4596587)
chr4 (174-241)||(32554528-32554594)
chr4 (47-130)||(41442477-41442560)
chr4 (83-138)||(46443804-46443859)
chr4 (130-185)||(51002647-51002702)
chr4 (85-155)||(35372109-35372179)
chr4 (85-121)||(9983765-9983801)
chr4 (60-100)||(50521290-50521330)
[»] chr7 (23 HSPs)
chr7 (12-227)||(33480418-33480629)
chr7 (47-236)||(42335863-42336052)
chr7 (60-156)||(21129325-21129421)
chr7 (44-190)||(26914307-26914453)
chr7 (50-239)||(35812639-35812827)
chr7 (60-240)||(21828196-21828375)
chr7 (24-187)||(3940619-3940778)
chr7 (89-190)||(36066176-36066276)
chr7 (13-190)||(13431629-13431802)
chr7 (240-362)||(8284464-8284586)
chr7 (64-188)||(3351119-3351243)
chr7 (85-211)||(49164720-49164845)
chr7 (13-196)||(9429295-9429474)
chr7 (44-230)||(26448387-26448578)
chr7 (44-138)||(26912346-26912440)
chr7 (44-236)||(12177825-12178015)
chr7 (105-186)||(48393248-48393329)
chr7 (68-143)||(31329570-31329644)
chr7 (45-155)||(40351766-40351877)
chr7 (60-204)||(1693989-1694132)
chr7 (85-155)||(22318663-22318733)
chr7 (64-229)||(15133233-15133397)
chr7 (59-108)||(44157239-44157287)
[»] chr6 (21 HSPs)
chr6 (13-187)||(34540827-34540998)
chr6 (46-187)||(31153604-31153745)
chr6 (17-239)||(12174315-12174534)
chr6 (138-233)||(31236882-31236976)
chr6 (85-229)||(33344881-33345024)
chr6 (138-233)||(31246258-31246352)
chr6 (85-239)||(35121864-35122016)
chr6 (23-143)||(34573197-34573316)
chr6 (77-185)||(11274605-11274712)
chr6 (60-233)||(21954405-21954576)
chr6 (92-187)||(5608079-5608173)
chr6 (85-196)||(34329781-34329892)
chr6 (44-239)||(9815592-9815782)
chr6 (83-235)||(10903085-10903237)
chr6 (13-189)||(10668846-10669016)
chr6 (126-206)||(35067103-35067183)
chr6 (47-147)||(31787837-31787937)
chr6 (123-156)||(15989354-15989387)
chr6 (89-166)||(32331535-32331612)
chr6 (89-153)||(9524836-9524900)
chr6 (126-233)||(21954777-21954882)
[»] chr2 (23 HSPs)
chr2 (60-196)||(16646917-16647053)
chr2 (64-196)||(36186568-36186700)
chr2 (60-166)||(34345964-34346068)
chr2 (46-240)||(16547683-16547879)
chr2 (46-143)||(40876936-40877033)
chr2 (13-155)||(5163783-5163922)
chr2 (44-155)||(28556604-28556715)
chr2 (85-195)||(35280893-35280999)
chr2 (24-158)||(38561844-38561974)
chr2 (60-155)||(30257779-30257874)
chr2 (85-208)||(44157275-44157397)
chr2 (51-187)||(18829934-18830077)
chr2 (81-156)||(17271258-17271333)
chr2 (44-141)||(28148908-28149004)
chr2 (97-186)||(38608314-38608403)
chr2 (60-239)||(15925514-15925694)
chr2 (126-186)||(32596747-32596807)
chr2 (44-187)||(38134092-38134232)
chr2 (64-172)||(32415357-32415463)
chr2 (123-187)||(40705888-40705952)
chr2 (85-161)||(26350434-26350509)
chr2 (84-143)||(38035331-38035390)
chr2 (102-185)||(38565174-38565256)
[»] chr3 (20 HSPs)
chr3 (44-155)||(33510096-33510207)
chr3 (44-158)||(15670937-15671051)
chr3 (47-210)||(33682606-33682769)
chr3 (46-144)||(54417032-54417130)
chr3 (47-158)||(39838489-39838599)
chr3 (87-231)||(168610-168752)
chr3 (85-196)||(11365107-11365218)
chr3 (77-158)||(17713325-17713405)
chr3 (77-158)||(19014554-19014634)
chr3 (85-196)||(47000824-47000934)
chr3 (60-158)||(27538781-27538879)
chr3 (17-186)||(2758070-2758238)
chr3 (100-188)||(8266560-8266648)
chr3 (85-232)||(33290759-33290906)
chr3 (83-159)||(46744005-46744081)
chr3 (16-239)||(11383585-11383803)
chr3 (62-125)||(7741735-7741798)
chr3 (84-143)||(16675760-16675819)
chr3 (84-143)||(39630317-39630376)
chr3 (81-159)||(84079-84156)
[»] chr8 (31 HSPs)
chr8 (13-227)||(13580286-13580496)
chr8 (86-185)||(41849442-41849540)
chr8 (13-158)||(26835590-26835732)
chr8 (62-187)||(43872544-43872669)
chr8 (81-181)||(36042839-36042938)
chr8 (60-153)||(22486596-22486689)
chr8 (64-215)||(13236221-13236372)
chr8 (85-158)||(21347500-21347573)
chr8 (13-113)||(34142015-34142112)
chr8 (77-158)||(12181872-12181952)
chr8 (77-158)||(12426300-12426380)
chr8 (60-144)||(18987181-18987265)
chr8 (47-143)||(22930343-22930439)
chr8 (99-190)||(24606846-24606936)
chr8 (64-154)||(17786508-17786598)
chr8 (85-227)||(26801912-26802053)
chr8 (119-241)||(34142146-34142266)
chr8 (85-185)||(31277948-31278049)
chr8 (84-152)||(32646581-32646649)
chr8 (41-179)||(35480977-35481116)
chr8 (97-190)||(7255474-7255567)
chr8 (17-93)||(28376652-28376725)
chr8 (89-159)||(31383538-31383608)
chr8 (17-239)||(4350580-4350805)
chr8 (85-168)||(32349536-32349620)
chr8 (85-168)||(32366197-32366281)
chr8 (97-188)||(9052948-9053039)
chr8 (60-143)||(9191229-9191312)
chr8 (164-235)||(32036874-32036945)
chr8 (140-187)||(39295473-39295520)
chr8 (92-143)||(44816628-44816679)
[»] chr1 (24 HSPs)
chr1 (13-240)||(1240418-1240646)
chr1 (51-238)||(15102967-15103150)
chr1 (16-154)||(33735750-33735885)
chr1 (77-185)||(35204188-35204295)
chr1 (47-185)||(3265435-3265572)
chr1 (97-190)||(38742466-38742559)
chr1 (85-230)||(49762375-49762519)
chr1 (17-114)||(8246760-8246854)
chr1 (64-187)||(35405375-35405498)
chr1 (85-158)||(4626526-4626600)
chr1 (15-185)||(1153694-1153860)
chr1 (88-196)||(22667153-22667261)
chr1 (79-156)||(4626894-4626969)
chr1 (131-188)||(20756780-20756837)
chr1 (122-185)||(36382975-36383038)
chr1 (93-155)||(10976117-10976179)
chr1 (85-143)||(44807382-44807440)
chr1 (124-185)||(30718180-30718241)
chr1 (85-153)||(45012809-45012877)
chr1 (13-47)||(22667683-22667717)
chr1 (64-154)||(23897902-23897991)
chr1 (88-166)||(29062354-29062432)
chr1 (85-134)||(42783947-42783996)
chr1 (110-182)||(40651277-40651348)
[»] scaffold0531 (1 HSPs)
scaffold0531 (23-238)||(9702-9915)
[»] scaffold0527 (2 HSPs)
scaffold0527 (91-196)||(1711-1816)
scaffold0527 (91-196)||(9774-9879)
[»] scaffold0074 (1 HSPs)
scaffold0074 (174-236)||(46942-47004)
[»] scaffold0031 (1 HSPs)
scaffold0031 (89-170)||(47551-47632)
[»] scaffold0007 (1 HSPs)
scaffold0007 (174-239)||(4457-4522)


Alignment Details
Target: scaffold0777 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 374
Target Start/End: Original strand, 5835 - 6193
Alignment:
Q  11 cataggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgt 110  Q
    |||| |||||| ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5835 catatgggcaccaaaattattatttttatg----agtagttagtactacatagatatatttctttctaaattgctttgattaattatattgaaaatatgt 5930  T
Q  111 ttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtcca 210  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5931 ttttaaagaattttgattatgaatgaattttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtcca 6030  T
Q  211 gggcattaaaaatcttaggaccggccctgcaattacaagtatttaggcaacttggtgatgctagtgtcttttactcgtttcaaaaccgcaagtccataag 310  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6031 gggcattaaaaatcttaggaccgg-cctgcaattacaagtatttaggcaacttggtgatgctagcgtcttttactcgtttcaaaaccgcaagtccataag 6129  T
Q  311 catacaaaagaaaagaatcccctacaacaagagaccagaaacacaaccaaacgcaactcctaat 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6130 catacaaaagaaaagaatcccctacaacaagagaccagaaacacaaccaaacgcaactcctaat 6193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 3193662 - 3193437
Alignment:
Q  11 cataggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgt 110  Q
    |||| |||||| ||||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  3193662 cataagggcaccaaaattattatttttatgtagtagg---tagtactacatagatatatttctttttaaattgctttgaataattatattgaaaatatgt 3193566  T
Q  111 ttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtcca 210  Q
    |||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  3193565 ttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaaaaggacataattttattaattcgccca 3193466  T
Q  211 gggcattaaaaatcttaggaccggccctg 239  Q
    ||||  |||||||||||||||||||||||    
T  3193465 gggcgctaaaaatcttaggaccggccctg 3193437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 39542402 - 39542589
Alignment:
Q  14 aggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttt 113  Q
    |||||||  |||||||||||||||| ||||||||   |||||||| ||  |||||| | ||| ||||  || || ||| |||||||||||||||||||||    
T  39542402 aggggcatcaaaattattatttttacgtagtagt---tagtactatatgaatatatattttt-taaagcgtgtttattgattatattgaaaatatgtttt 39542497  T
Q  114 taaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcg 206  Q
    ||||||| ||||||||||||| || ||||| ||||||||||| || ||||||||||||||| |||||||||||| || ||||| |||||||||    
T  39542498 taaagaactttgattatgaataaa-cttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacaattttattaattcg 39542589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 18600482 - 18600595
Alignment:
Q  126 attatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatct 225  Q
    ||||||||||| ||||||||||||||||||||| |||||||||  ||||||||||||||  || |  |||| || ||||||||||||||| |||||||||    
T  18600482 attatgaatgattcttttgcaataaaaaatacaagaagaaagatgttcaaataattaaagagataagattttatgaattcgtccagggcactaaaaatct 18600581  T
Q  226 taggaccggccctg 239  Q
    ||||||||||||||    
T  18600582 taggaccggccctg 18600595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 502827 - 502959
Alignment:
Q  48 agttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaa 147  Q
    |||||||| || |||||||||||||||| ||| |   ||||||||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||    
T  502827 agttagtattatatagatatatttctttttaactc--tttgattaattctattgaaaatatatttttagagaactttgattatgaatgaatcttttgcaa 502924  T
Q  148 taaaaaatacatgaagaaagacattcaaataattaaaag 186  Q
     |||||| |    ||  ||||||||||||||||||||||    
T  502925 aaaaaaaaa----aaagaagacattcaaataattaaaag 502959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 51 - 239
Target Start/End: Original strand, 18626684 - 18626868
Alignment:
Q  51 tagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataa 150  Q
    |||||||  |||||||||||||||| ||  ||||||||||||||| ||||||| | || |||||  |||| ||||||||| |||||||||| ||||| ||    
T  18626684 tagtactgtatagatatatttctttttactttgttttgattaattctattgaagaaatattttttgagaactttgattataaatgaatcttgtgcaacaa 18626783  T
Q  151 aaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    |||||||   |||||| | ||| ||||||||||||||||| ||||| |||  |||| | | ||||  ||||| ||||||||||||||||    
T  18626784 aaaatac---aagaaa-atattaaaataattaaaaggacacaattttattgtttcgcctatggcaccaaaaaacttaggaccggccctg 18626868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 36161045 - 36161171
Alignment:
Q  23 aaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaatt 122  Q
    |||||||||||||||||||||||||   || || || |||||||| ||| ||   ||||| |||||||||||||||||||||||||| ||||||| || |    
T  36161045 aaaattattatttttatgtagtagt---taatattatatagatatttttttt---aaattattttgattaattatattgaaaatatg-ttttaaaaaact 36161137  T
Q  123 ttgattatgaatgaatcttttgcaataaaaaata 156  Q
    ||||| |||||||||||||||| |||||||||||    
T  36161138 ttgatcatgaatgaatcttttgtaataaaaaata 36161171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 187
Target Start/End: Complemental strand, 32257795 - 32257652
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||| ||||||||||||||| ||| ||| ||| ||||||||||| ||||||||||||  ||||| |||| ||||||||| ||||||| || |    
T  32257795 tagtagttagtattacatagatatatttttttttaatttgctttgattaattttattgaaaatatacttttagagaactttgattataaatgaattttgt 32257696  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    | || ||||||| || ||| ||| | |||  |||||||||||||    
T  32257695 gtaacaaaaaatgcaagaacaaaaaaattggaataattaaaagg 32257652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 12263786 - 12263648
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttct--aaattgttttgattaattatattgaaaatatgt 110  Q
    ||||||||| ||||||||||||||||  || | ||   |||||||| |||||||| ||| ||| |  || | | ||||||||||| |||||||||||| |    
T  12263786 taggggcaccaaaattattatttttacttaatggt---tagtactatatagatatttttttttttttaattcgctttgattaattctattgaaaatatat 12263690  T
Q  111 ttttaaagaattttgattatgaatgaatcttttgcaataaaa 152  Q
    |||||||||| |||||||||  ||||||||||||||||||||    
T  12263689 ttttaaagaactttgattatagatgaatcttttgcaataaaa 12263648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 60 - 225
Target Start/End: Complemental strand, 25034446 - 25034282
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    |||||||||||||||| ||||||| ||||||||||| |||| ||||| | |||||| | || ||| || || ||||||| |||||||| |||||||  |     
T  25034446 atagatatatttcttt-taaattggtttgattaattgtattaaaaatgtatttttagaaaactttaataataaatgaattttttgcaacaaaaaatgtaa 25034348  T
Q  160 gaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatct 225  Q
    |||||||   ||| || ||||||||| |||||||||| |||  |||||||||| ||  ||||||||    
T  25034347 gaagaaaactattgaagtaattaaaatgacataattttattgtttcgtccaggacaccaaaaatct 25034282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 18600222 - 18600294
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatga 132  Q
    |||||||| ||||||| | ||| | ||||||||||||||||||||||||||||||| |||| |||||||||||    
T  18600222 atagatatctttctttttgaatcgatttgattaattatattgaaaatatgtttttagagaactttgattatga 18600294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 20870635 - 20870842
Alignment:
Q  23 aaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaatt 122  Q
    ||||||||||||||||| |||||||   |||||||| |||    ||||||||| ||| |   ||||||||||| |||||| ||||| |||||| | || |    
T  20870635 aaaattattatttttatttagtagt---tagtactatata----tatttctttttaattccctttgattaattttattgataatatatttttagataact 20870727  T
Q  123 ttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaa 222  Q
    |||||||| ||||||| || ||||| ||||||| || ||| ||| | ||| |||||||||||| |  | ||||| |||  ||||||||||||| ||||||    
T  20870728 ttgattataaatgaatattctgcaacaaaaaatgcaagaa-aaaaatattaaaataattaaaatggtacaattt-attgtttcgtccagggcactaaaaa 20870825  T
Q  223 tcttaggaccggccctg 239  Q
    |  |||||||| |||||    
T  20870826 ttctaggaccgaccctg 20870842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 3597003 - 3596910
Alignment:
Q  63 gatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    ||||||||||||| ||| | ||||||||||||| |||| ||||||| |||||| | || ||||| ||| | ||||||||||| || ||||||||    
T  3597003 gatatatttctttttaattcgttttgattaattctattaaaaatatatttttataaaaatttgaatataagtgaatcttttgaaaaaaaaaata 3596910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 27548560 - 27548453
Alignment:
Q  127 ttatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatctt 226  Q
    |||||||||||| ||| ||| ||||||||| | |||||||||||||  ||||||||||||| || || || ||| |||||| |||| ||| |||| ||||    
T  27548560 ttatgaatgaatttttcgcactaaaaaatataagaagaaagacatttgaataattaaaagg-cacaactttattgattcgtacaggacatcaaaagtctt 27548462  T
Q  227 aggaccggc 235  Q
    ||| |||||    
T  27548461 agggccggc 27548453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 37147927 - 37147852
Alignment:
Q  83 gttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||||||||||||| |||||||||||| |||||||| ||  || ||||| ||||||| |||| ||| ||||||||||    
T  37147927 gttttgattaattgtattgaaaatatatttttaaaaaaccttaattataaatgaatattttacaagaaaaaataca 37147852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 145
Target Start/End: Complemental strand, 16570603 - 16570505
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgc 145  Q
    ||||| |||| | |||||||||||||||| ||| |   ||||||||||| |||| ||||||| |||||| |||| ||||||||  ||| ||||||||||    
T  16570603 tagttggtaccatatagatatatttctttttaattcactttgattaattctattaaaaatatatttttagagaactttgattaaaaattaatcttttgc 16570505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 8934116 - 8934185
Alignment:
Q  84 ttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaa 153  Q
    |||||||||||||||||||| |||| |||||| ||| | || |||||||||||||| |||| || |||||    
T  8934116 ttttgattaattatattgaagatatatttttagagagtcttaattatgaatgaatcatttgtaacaaaaa 8934185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 10325672 - 10325603
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaa 154  Q
    |||||||||||||||||| ||||  |||||| | || |||||| || |||||||||||||||| ||||||    
T  10325672 tttgattaattatattgagaatacatttttagaaaactttgatcataaatgaatcttttgcaacaaaaaa 10325603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 11417143 - 11417211
Alignment:
Q  117 agaattttgattatgaatgaat-cttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    ||||| |||||||||||||||| ||||||||||||||||| |   |||||| |||||  |||||||||||||    
T  11417143 agaatcttgattatgaatgaatccttttgcaataaaaaatgc---aagaaaaacatttgaataattaaaagg 11417211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 7887325 - 7887266
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttcttt 75  Q
    ||||||||| ||||||||||||||||     ||||||||||||||| |||||||| |||||||    
T  7887325 taggggcaccaaaattattattttta---cttagtagttagtactatatagatatgtttcttt 7887266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 16569364 - 16569275
Alignment:
Q  90 ttaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataatt 181  Q
    |||||| ||||||||||||||||||| | ||  |||| ||| ||| ||||| |||||  ||||||| || |||||||||||||  |||||||    
T  16569364 ttaattctattgaaaatatgtttttagaaaaccttgaatataaataaatctattgca--aaaaaatgcaagaagaaagacattgcaataatt 16569275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 2113828 - 2114053
Alignment:
Q  11 cataggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgt 110  Q
    ||||||||||| ||||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2113828 cataggggcaccaaaattattatctttatgtag---tagttagtactacatagatatatttctttctaaattgctttgattaattatattgaaaatatgt 2113924  T
Q  111 ttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtcca 210  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||   |    
T  2113925 ttttaaagaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaaaaggacatagttttattgattcgctta 2114024  T
Q  211 gggcattaaaaatcttaggaccggccctg 239  Q
    ||||| |||||||||||||||||| ||||    
T  2114025 gggcactaaaaatcttaggaccggtcctg 2114053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 29118464 - 29118602
Alignment:
Q  15 ggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattg-ttttgattaattatattgaaaatatgtttt 113  Q
    ||||||| |||||||||||||||||||||||||   ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  29118464 ggggcaccaaaattattatttttatgtagtagt---tagtactacatagatatatttctttttaaattgcttttaattaattatattgaaaatatgtttt 29118560  T
Q  114 taaagaattttgattatgaatgaatcttttgcaataaaaaat 155  Q
    ||||||| ||||||||||||||||| ||||||||||||||||    
T  29118561 taaagaactttgattatgaatgaatattttgcaataaaaaat 29118602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 44 - 236
Target Start/End: Complemental strand, 15986980 - 15986788
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||||||||| |||||||||||| ||| |||  |||||||||||||| ||||||||||||  ||||||||||  || || |||||||||||||||    
T  15986980 tagtagttagtactatatagatatatttatttttaatgtgttttgattaattctattgaaaatataattttaaagaaccttaatcatgaatgaatctttt 15986881  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggcc 236  Q
     |  || || ||||| ||||||| ||||| |||||||||||| | |  |||||||| |||||||| |||||| |||| || ||| ||||||||    
T  15986880 acggtataagatacaagaagaaaaacatttaaataattaaaaaggcgcaatttcatcaattcgtctagggcactaaatattttaagaccggcc 15986788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 3643255 - 3643060
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||||||||| |||||||||||||||| ||| |||  ||||||||||||||||||||  | ||||||||||  |||||| || ||||||| || |    
T  3643255 tagtagttagtactatatagatatatttctttttaatttgcattgattaattatattgaaaagttatttttaaagagctttgataataaatgaattttgt 3643156  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    |||| ||||||| || ||||||| | |||  ||||||||||| |||| ||||| |||  ||||  |||||||  | || | |||||||||||||||    
T  3643155 gcaacaaaaaatccaagaagaaaaatattggaataattaaaatgacacaattttattgtttcgctcagggcaccataagttttaggaccggccctg 3643060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 23870038 - 23870176
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||| ||||||||||||||||     ||||||||||||||| |||||||||| | ||| ||| | ||||||||||||| |||||||||||| |||    
T  23870038 taggggcaccaaaattattattttta---cttagtagttagtactatatagatatatatttttttaattcgttttgattaattctattgaaaatatattt 23870134  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaa 154  Q
    ||| | || ||||||||| ||||||| |||||||| ||||||    
T  23870135 ttagataactttgattataaatgaatattttgcaacaaaaaa 23870176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 5627536 - 5627691
Alignment:
Q  70 ttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagac 169  Q
    |||||| ||| | ||||||||||||||||||||||| ||||||||| | || | ||||||| ||||||| |||||||| ||||||| ||  |||||| |     
T  5627536 ttctttttaattcgttttgattaattatattgaaaaaatgtttttatataactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaat 5627635  T
Q  170 attcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatctt 226  Q
    |||  ||||||||||||| ||| |||| |||  |||||||||||||| |||||||||    
T  5627636 atttgaataattaaaagggcatgattt-attgtttcgtccagggcatcaaaaatctt 5627691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 36071664 - 36071557
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgca 146  Q
    |||||||||||| |||||||||||||||| ||| ||  |||||||||||  ||||||||||| |||||| |||| ||||||||| |||||||||| ||||    
T  36071664 tagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaaatatatttttagagaactttgattataaatgaatcttatgca 36071565  T
Q  147 ataaaaaa 154  Q
    | ||||||    
T  36071564 acaaaaaa 36071557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 238
Target Start/End: Complemental strand, 25779732 - 25779558
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||||||| ||  || |||||||||||| | || ||||||| ||| || | || |||||||||||||||||||| ||||| ||| ||| ||  |||    
T  25779732 atatatttctttttacctttttttgattaattttgttaaaaatatatttgtagaaaactttgattatgaatgaatcttctgcaacaaagaatgcaaaaag 25779633  T
Q  164 aaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccct 238  Q
     |||| ||||||||||||| || |||  || || ||| ||||||||||| | | ||||||||||||| |||||||    
T  25779632 gaagatattcaaataattagaatgacgcaactttattgattcgtccaggacttcaaaaatcttaggatcggccct 25779558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 20811597 - 20811476
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||| ||| ||| ||| ||| |||| ||||||||||||||| ||||||||||||||||||||||| ||||  ||||||||  ||||||  | ||||    
T  20811597 atatatttgtttttaacttgctttaattatttatattgaaaatatatttttaaagaattttgattatgagtgaagtttttgcaacgaaaaatgaaagaag 20811498  T
Q  164 aaagacattcaaataattaaaa 185  Q
     || |||||| |||||||||||    
T  20811497 caaaacattcgaataattaaaa 20811476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 7102166 - 7102289
Alignment:
Q  48 agttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaa 147  Q
    |||||||| || |||||||||||| ||| ||| ||||||||||||||  |||||||||||  |||||| |||| ||| ||||| |||||||||| |||||    
T  7102166 agttagtattatatagatatattttttt-taatttgttttgattaatcctattgaaaatacatttttagagaacttttattataaatgaatcttgtgcaa 7102264  T
Q  148 taaaaaatacatgaagaaagacatt 172  Q
     ||||| |||| ||||||| |||||    
T  7102265 caaaaagtacaagaagaaaaacatt 7102289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 12320423 - 12320534
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||||||  | |||||||||| ||||| ||| | | |||||||||||||||||| ||||| |||||||| || || |||||| ||||||| ||||    
T  12320423 tagtagttagtataatatagatatatatctttttaattcggtttgattaattatattgagaatatttttttaaaaaacttcgattataaatgaatatttt 12320522  T
Q  144 gcaataaaaaat 155  Q
    |||| |||||||    
T  12320523 gcaacaaaaaat 12320534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 29369991 - 29369858
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaaga---attttgattatgaatgaatct-----tttgcaataaa 151  Q
    ||||||| |||| ||| ||| ||||||||||||||| |||||||||||| |||||| |||   ||  | |||||||||||||||     ||| ||| |||    
T  29369991 atagataaatttatttttaatttgttttgattaattctattgaaaatatatttttagagaatcatcataattatgaatgaatcttttaatttacaacaaa 29369892  T
Q  152 aaatacatgaagaaagacattcaaataattaaaa 185  Q
    ||||||| ||||||||||||||||||||||||||    
T  29369891 aaatacaagaagaaagacattcaaataattaaaa 29369858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 47 - 154
Target Start/End: Complemental strand, 43515964 - 43515857
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgca 146  Q
    ||||||||| || |||||||||| ||||| ||| ||| |||||||||||||||| | ||||| || ||| | || ||||||||| |||||||||||||||    
T  43515964 tagttagtattatatagatatatatctttttaatttggtttgattaattatattaagaatatattgttagaaaactttgattataaatgaatcttttgca 43515865  T
Q  147 ataaaaaa 154  Q
    | ||||||    
T  43515864 acaaaaaa 43515857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 7853314 - 7853423
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||||||||| |||||||||| || || ||| |   |||||||||| ||||||||||||| |||||| | || ||||||||| |||||||  |||    
T  7853314 tagtagttagtactatatagatatatatccttttaattcagtttgattaatgatattgaaaatatatttttagaaaactttgattataaatgaattcttt 7853413  T
Q  144 gcaataaaaa 153  Q
    ||||||||||    
T  7853414 gcaataaaaa 7853423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 48653743 - 48653828
Alignment:
Q  100 tgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    ||||||||| || ||| ||||| || |||||||||||||||||||||| |||| || || |||||||||||||| |||||||||||    
T  48653743 tgaaaatattttcttagagaatcttaattatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaa 48653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 212
Target Start/End: Complemental strand, 375917 - 375791
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    |||||||||| ||||||| |||||||||||||| || |||||| ||||  ||||||||  | |||||||||  | ||||||| ||||| |||||||||||    
T  375917 tttgattaat-atattgataatatgtttttaaaaaactttgataatgacggaatctttaaccataaaaaatgtaagaagaaatacatttaaataattaaa 375819  T
Q  185 aggacataatttcattaattcgtccagg 212  Q
    | |  | ||||| |||||||||||||||    
T  375818 aaggtacaattttattaattcgtccagg 375791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 53178768 - 53178907
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||| || ||| |||||||| |||  || ||  ||||||||||| |||||||  ||| ||||||| ||| ||||||||||||||||| ||||    
T  53178768 tagtagttagtattatataaatatattttttt--aacttactttgattaattttattgaatgtatatttttaacgaactttgattatgaatgaat-tttt 53178864  T
Q  144 gcaa-taaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    ||||  |||||||||   |||||||||||| ||||||||||||    
T  53178865 gcaacaaaaaaataccataagaaagacatttaaataattaaaa 53178907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 34686606 - 34686672
Alignment:
Q  240 caattacaagtatttaggcaacttggtgatgctagtgtcttttactcgtttcaaaaccgcaagtcca 306  Q
    |||||||||| |||| | ||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  34686606 caattacaagaatttggacaaattggtgatgcgagtgtcttttactggtttcaaaaccgcaagtcca 34686672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 37226298 - 37226419
Alignment:
Q  89 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagga 188  Q
    ||||||| ||||  |||||| |||| |||  |||||||||||  ||||||||||||||| |||||||  |  || ||||||||||||||||||||||| |    
T  37226298 attaattctattagaaatatattttcaaatgattttgattattgatgaatcttttgcaacaaaaaatgaaataaaaaagacattcaaataattaaaagaa 37226397  T
Q  189 cataatttcattaattcgtcca 210  Q
    ||  |||| ||| |||||||||    
T  37226398 cacgattttattgattcgtcca 37226419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 55147741 - 55147668
Alignment:
Q  83 gttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    ||||||||||||| |||||||||| | |||||| |||| ||||||||| |||||||||| | ||| ||||||||    
T  55147741 gttttgattaattttattgaaaatgtctttttagagaactttgattataaatgaatcttgtacaacaaaaaata 55147668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 40807914 - 40807830
Alignment:
Q  86 ttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagaca 170  Q
    |||||||||| |||| |||||||||||||| | ||  ||||||||||||||||||| | ||| ||||||| ||  ||||||||||    
T  40807914 ttgattaattctattaaaaatatgtttttagataacattgattatgaatgaatcttatccaacaaaaaatgcaaaaagaaagaca 40807830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 8240886 - 8240961
Alignment:
Q  81 ttgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    ||||||||||||||| ||| |||||||| |||| ||||||| ||  |||||||||  |||||||||| ||||||||    
T  8240886 ttgttttgattaattctatagaaaatatattttcaaagaatcttatttatgaatggttcttttgcaacaaaaaata 8240961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 34682400 - 34682481
Alignment:
Q  281 ttactcgtttcaaaaccgcaagtccataagcatacaaaagaaaagaatcccctacaacaagagaccagaaacacaaccaaac 362  Q
    ||||| |||||||||||| || |||| ||||| ||||||||||||||||   |||||||||| || | ||||||||| ||||    
T  34682400 ttactggtttcaaaaccgtaactccagaagcaaacaaaagaaaagaatcttgtacaacaagaaactaaaaacacaacaaaac 34682481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 55147964 - 55147880
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatatt 100  Q
    ||||||||| ||||||||||||||||  || ||||    | ||| |||||||||||||||||| ||| ||||||||||||||| ||||    
T  55147964 taggggcaccaaaattattatttttacttaatagtc---actacaacatagatatatttctttttaatttgttttgattaattctatt 55147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 312
Target Start/End: Original strand, 34694538 - 34694610
Alignment:
Q  240 caattacaagtatttaggcaacttggtgatgctagtgtcttttactcgtttcaaaaccgcaagtccataagca 312  Q
    |||||| ||| |||| | ||| |||||||| | ||||||||||||| ||||||||||||||||| || |||||    
T  34694538 caattagaagaatttggccaagttggtgattccagtgtcttttactggtttcaaaaccgcaagtacagaagca 34694610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 4596587 - 4596445
Alignment:
Q  23 aaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaatt 122  Q
    ||||||||||||||||| |||| ||   ||||| || ||| |||||||| ||| ||| |   ||||||| ||| |||||||||||| |  |  || ||      
T  4596587 aaaattattatttttatttagttgt---tagtaatatatatatatatttgtttttaattcactttgattgattttattgaaaatatatactagaaaaacc 4596491  T
Q  123 ttgattatgaatgaatcttttgcaataaaaaatacatgaagaaaga 168  Q
    ||||||||||||||||||||||||| ||||||| ||  ||||||||    
T  4596490 ttgattatgaatgaatcttttgcaacaaaaaatgcaaaaagaaaga 4596445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 32554594 - 32554528
Alignment:
Q  174 aaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctgca 241  Q
    ||||| ||||||||||||||||| |||  ||| |||| ||||  ||||||||||||||||||||||||    
T  32554594 aaatatttaaaaggacataattt-attgtttcttccaaggcaccaaaaatcttaggaccggccctgca 32554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 41442560 - 41442477
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattat 130  Q
    |||| ||||| | ||||||||| || ||| ||| ||  |||||||||||||| ||||||||| |||||| |||| |||||||||    
T  41442560 tagtcagtacaatatagatatacttatttttaatttactttgattaattatactgaaaatatctttttagagaagtttgattat 41442477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 46443859 - 46443804
Alignment:
Q  83 gttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaat 138  Q
    ||||||||||||| ||||  |||||| |||||| | ||||||||||||||||||||    
T  46443859 gttttgattaattttattataaatatatttttagataattttgattatgaatgaat 46443804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 185
Target Start/End: Complemental strand, 51002702 - 51002647
Alignment:
Q  130 tgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    |||||||||||||||| |||||||||  | |||||||||||||  |||||||||||    
T  51002702 tgaatgaatcttttgcgataaaaaatgtaagaagaaagacatttgaataattaaaa 51002647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 35372179 - 35372109
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaat 155  Q
    |||||||||||||||||||||||| |||||| |||  ||| ||||| || ||||||  ||||| |||||||    
T  35372179 tttgattaattatattgaaaatatatttttagagagctttaattataaacgaatctcatgcaacaaaaaat 35372109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 9983801 - 9983765
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaat 121  Q
    |||||||||||||||||||||||| |||||| |||||    
T  9983801 tttgattaattatattgaaaatatatttttagagaat 9983765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 50521330 - 50521290
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatatt 100  Q
    |||||||||||||||| ||| | ||||||||||||||||||    
T  50521330 atagatatatttctttttaactcgttttgattaattatatt 50521290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 33480629 - 33480418
Alignment:
Q  12 ataggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtt 111  Q
    |||||||||| |||||||||||||||||||| ||||   ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  33480629 ataggggcaccaaaattattatttttatgtaatagt---tagtactacatagatatatttctttctaaattgctttgattaattatattaaaaatatgtt 33480533  T
Q  112 tttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccag 211  Q
    |||||||||  || ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||     
T  33480532 tttaaagaacctt-attatgaattaatcttctgcaataaaaaatacaagaagaaagacattcaaataattaaaaggacataattttattaattcgttcaa 33480434  T
Q  212 ggcattaaaaatctta 227  Q
    |||| |||||||||||    
T  33480433 ggcactaaaaatctta 33480418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 42336052 - 42335863
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgca 146  Q
    ||||||||| || |||||||||||||||| ||| | | ||| |||||||||| ||||||||| |||||||| || ||||||||| |||||||||||||||    
T  42336052 tagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaaatatatttttaaaaaactttgattataaatgaatcttttgca 42335953  T
Q  147 ataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggcc 236  Q
    | |||||||  | ||| |||   ||| |||| ||||||| |||||||||| |||| ||||||||  |||| |||||| | ||||||||||    
T  42335952 acaaaaaatgtaagaaaaaaactattaaaatgattaaaaagacataattttattatttcgtccaaagcataaaaaatttaaggaccggcc 42335863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 156
Target Start/End: Complemental strand, 21129421 - 21129325
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    |||||||||||||||| ||| ||| ||||||||||| |||||||||||| |||||| |||||||||||||| ||| |||||||||||||||||||||    
T  21129421 atagatatatttctttttaatttggtttgattaattctattgaaaatatttttttagagaattttgattataaattaatcttttgcaataaaaaata 21129325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 190
Target Start/End: Complemental strand, 26914453 - 26914307
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||| || ||| |||| |||  || ||| | |||||||||||||||||||||||||| |||||||| ||  || ||||| ||||||| ||||    
T  26914453 tagtagttagtattatatacatatgtttacttttaattcgttttgattaattatattgaaaatatatttttaaataacgttaattataaatgaatatttt 26914354  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
    |||| ||||||| || ||||||| | ||| |||||||||||||||||    
T  26914353 gcaacaaaaaatgcaagaagaaaaatattaaaataattaaaaggaca 26914307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 35812639 - 35812827
Alignment:
Q  50 ttagtactacatagatatatttctttctaaattgttttgattaattatattga-aaatatgtttttaaagaattttgattatgaatgaatcttttgcaat 148  Q
    ||||||||| |||||||||||||||| ||| | | |||||| |||| |||||| |||||| |||||| | || ||||||||| ||||||| ||||||||     
T  35812639 ttagtactatatagatatatttctttttaattcgctttgatcaattctattgataaatatatttttagataactttgattataaatgaatattttgcaac 35812738  T
Q  149 aaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    ||||||| || ||||||  | |||  ||||||| |||| ||| ||||| |||| |||| | |||||||||||||||||||| |||| ||||    
T  35812739 aaaaaatgcaagaagaataatattggaataatt-aaagcacacaattt-attatttcgcctagggcattaaaaatcttagggccggtcctg 35812827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 21828196 - 21828375
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    |||||||||||||||| ||| ||||||||||||||  |||||||||||  |||||| |||| ||||||||| |||||||||| ||||| |||||||| |     
T  21828196 atagatatatttctttttaacttgttttgattaatgctattgaaaata-ctttttagagaactttgattataaatgaatcttgtgcaacaaaaaataaaa 21828294  T
Q  160 gaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctgc 240  Q
    || |||| | |||  |||||||||||||  | |||||  ||  |||| |   ||||  |||||||||||||||||||||||    
T  21828295 gacgaaaaatattagaataattaaaagggtacaatttttttctttcgcctcaggcaccaaaaatcttaggaccggccctgc 21828375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 3940778 - 3940619
Alignment:
Q  24 aaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattt 123  Q
    |||||||||||||||  ||||||||   ||||  | |||||||||||||||| ||| ||  ||||||||||| |||| ||||||| ||||||||||| ||    
T  3940778 aaattattatttttacttagtagta---agtataatatagatatatttctttttaatttactttgattaattctatttaaaatatctttttaaagaactt 3940682  T
Q  124 tgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    ||||||| ||| |||||| |||||  |||||||||  |||||| | |||  |||||||||||||    
T  3940681 tgattataaataaatcttgtgcaa-caaaaatacaaaaagaaaaatattagaataattaaaagg 3940619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 36066176 - 36066276
Alignment:
Q  89 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagga 188  Q
    ||||||| |||||||||||| |||||| |||||||||||||||||| |||||||| |||  ||||||||| |||||||||||||  ||||| ||||| ||    
T  36066176 attaattgtattgaaaatatatttttagagaattttgattatgaataaatcttttacaa-caaaaatacaagaagaaagacatttgaataactaaaaaga 36066274  T
Q  189 ca 190  Q
    ||    
T  36066275 ca 36066276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 13431802 - 13431629
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    |||| |||| |||||||||||| |||| ||||||    ||||| || |||||||||||| ||| | | || |||||| ||||| |||||||||||| |||    
T  13431802 taggagcactaaaattattattcttatttagtagg---tagtattatatagatatatttatttttgattttttttgaataattctattgaaaatatattt 13431706  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
     |  ||||  |||||||||||||||||||| |||| |||||||||| ||| ||| || ||| ||||||||||| ||||    
T  13431705 gtggagaaccttgattatgaatgaatctttagcaacaaaaaatacaagaa-aaaaactttcgaataattaaaatgaca 13431629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 362
Target Start/End: Original strand, 8284464 - 8284586
Alignment:
Q  240 caattacaagtatttaggcaacttggtgatgctagtgtcttttactcgtttcaaaaccgcaagtccataagcatacaaaagaaaagaatcccctacaaca 339  Q
    ||||||||||  ||| | ||| |||||||||| | ||||||||||| ||||||||||||||||||   ||||| ||||||||||||| ||  | ||||||    
T  8284464 caattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagtctcgaagcaaacaaaagaaaagattcatccacaaca 8284563  T
Q  340 agagaccagaaacacaaccaaac 362  Q
    ||| || ||||||||||| ||||    
T  8284564 agaaacgagaaacacaacaaaac 8284586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 188
Target Start/End: Original strand, 3351119 - 3351243
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||||||| ||| | | ||||||||||| |||||||| ||| |||||| | || ||||||||| ||||||| |||| ||| ||||||| || ||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaag 3351218  T
Q  164 aaagacattcaaataattaaaagga 188  Q
    ||| | |||  ||||||||||||||    
T  3351219 aaaaatattttaataattaaaagga 3351243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 49164845 - 49164720
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    |||||||||||  ||| ||||||| |||||| ||||| ||  ||||||||||||||||||||  | ||||| || ||||||||||||| | |||||||||    
T  49164845 tttgattaatttaattaaaaatat-tttttagagaatcttatttatgaatgaatcttttgcagaataaaatgcaagaagaaagacatttacataattaaa 49164747  T
Q  185 aggacataatttcattaattcgtccag 211  Q
    | |||| ||||| ||| ||| ||||||    
T  49164746 atgacacaattttattgattagtccag 49164720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 9429474 - 9429295
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||| ||||||| ||||||||| || ||||   ||||| || ||| |||||||||||| ||  | ||||||||||||| |||||||||||| | |    
T  9429474 taggggcaccaaaattagtatttttatttaatagt---tagtattatataaatatatttctttttatctcgttttgattaattctattgaaaatat-tat 9429379  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataattt 196  Q
    |||||||| || |||||| ||| ||| |||||||| |  |||| |  |||| || | ||| ||||||||||||  |||||||||    
T  9429378 ttaaagaacttcgattataaataaattttttgcaacagcaaatgctagaagtaaaatattaaaataattaaaataacataattt 9429295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 26448387 - 26448578
Alignment:
Q  44 tagtagttagtactacatagatat----atttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatc 139  Q
    ||||||||||||||| ||||||||    |||||||| ||| |   ||||||||||| || | ||| ||| |||||| |||| |||||| || ||||||||    
T  26448387 tagtagttagtactatatagatatatatatttctttttaattcactttgattaattctactaaaagtatatttttagagaactttgataataaatgaatc 26448486  T
Q  140 ttttgcaataaaaaatacatgaagaaagaca-ttcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttagga 230  Q
    |||||||| ||||||| || ||| ||| | | || |||||||||||| |||| ||||| |||| ||| || | ||||  | |||||||||||    
T  26448487 ttttgcaacaaaaaatgcaagaaaaaaaatatttgaaataattaaaaagacaaaattttattatttcatcaaaggcaccagaaatcttagga 26448578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 138
Target Start/End: Original strand, 26912346 - 26912440
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaat 138  Q
    ||||||||||||||| |||||||||||||||| ||| | | ||||||||||| |||| || |||| |||||| | || ||||||||  |||||||    
T  26912346 tagtagttagtactatatagatatatttctttttaattcgctttgattaattctattcaagatatatttttagataactttgattacaaatgaat 26912440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 236
Target Start/End: Original strand, 12177825 - 12178015
Alignment:
Q  44 tagtagttagtactacatag--atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctt 141  Q
    ||||||||||||||| ||||  |||||| ||||| ||| | | ||| ||||||| |||||||||||| |||||| | || ||| |||||  |||||||||    
T  12177825 tagtagttagtactatatagatatatatatctttttaattcggtttaattaattttattgaaaatatatttttagaaaacttt-attatagatgaatctt 12177923  T
Q  142 ttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggcc 236  Q
    |||||| |||||||  | |||||||   |||  ||||||||| ||| || ||||   ||| |||||||||||||  |||| ||||||||| ||||    
T  12177924 ttgcaacaaaaaatgtaagaagaaaactattagaataattaatagggcacaatt---ttatttcgtccagggcaccaaaactcttaggactggcc 12178015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 48393329 - 48393248
Alignment:
Q  105 atatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaag 186  Q
    |||| |||||| | |||||||||||| ||| |||||||  ||| |||||||| | ||||||||||||| |||||||||||||    
T  48393329 atatatttttagataattttgattataaataaatctttcacaacaaaaaatataagaagaaagacatttaaataattaaaag 48393248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 143
Target Start/End: Complemental strand, 31329644 - 31329570
Alignment:
Q  68 atttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||| ||| ||| ||| |||||||||||||||||||| |||||||||||  || ||||||||| ||||||||    
T  31329644 atttcttt-taacttgatttcattaattatattgaaaatatatttttaaagaacctttattatgaattaatctttt 31329570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 40351877 - 40351766
Alignment:
Q  45 agtagttagtactacatagatatatttctttctaaattgtt-ttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||||| || ||||||||| || ||| | |||| |  ||| |||||| |||||||||||| ||||||||||| ||||||||| ||| |||||||     
T  40351877 agtagttagtattatatagatataattattttttaattatccttgtttaattctattgaaaatatatttttaaagaactttgattataaataaatcttta 40351778  T
Q  144 gcaataaaaaat 155  Q
     ||| |||||||    
T  40351777 tcaacaaaaaat 40351766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 1694132 - 1693989
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaa-taca 158  Q
    ||||||||||| |||| ||||||| |||||||| || ||||| || ||| |||||||||||  |||||||||||||| | |||| ||| |||||| | ||    
T  1694132 atagatatatt-cttt-taaattgctttgatta-ttctattgtaagtatatttttaaagaaccttgattatgaatgagttttttacaaaaaaaaaatgca 1694036  T
Q  159 tgaagaaag-acattcaaataattaaaaggacataatttcattaatt 204  Q
     ||| |||  |||||||||||||||||||| ||||| || |||||||    
T  1694035 agaaaaaaatacattcaaataattaaaagggcataactttattaatt 1693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 22318733 - 22318663
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaat 155  Q
    |||||||||||||||||| ||||| |||||| | || ||| ||||| ||| |||||||||||| |||||||    
T  22318733 tttgattaattatattgagaatatatttttagaaaactttaattataaataaatcttttgcaacaaaaaat 22318663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 229
Target Start/End: Complemental strand, 15133397 - 15133233
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||| | ||||||| | ||||||||||||| |||| |||| || |||||| | || ||||||||| ||||||| |||| ||| |||||||  | |||     
T  15133397 atatatatatttctaattcgttttgattaattctatttaaaaaatatttttagataactttgattataaatgaatattttacaacaaaaaatgtaagaaa 15133298  T
Q  164 aaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttagg 229  Q
    ||| | |||  ||||||||||| | |||||||| ||   ||||||||| |||  ||||||||||||    
T  15133297 aaaaatatttgaataattaaaaaggcataattt-atagtttcgtccagcgcaacaaaaatcttagg 15133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 44157287 - 44157239
Alignment:
Q  59 catagatatatttctttctaaattgttttgattaattatattgaaaatat 108  Q
    ||||||||||||||||| ||| |||||||| | |||||||||||||||||    
T  44157287 catagatatatttctttttaacttgttttg-tcaattatattgaaaatat 44157239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 34540998 - 34540827
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||| ||| ||||||||||||||||     ||||| ||| ||||| |||||||||||||||  ||| | |||||||||| || |||||||||||| |||    
T  34540998 tagggacactaaaattattattttta---cttagtaattaatactatatagatatatttcttattaactcgttttgattagttctattgaaaatatattt 34540902  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    ||||| ||| |||||||||||| ||| |||||||| |||||||||||||||||| |||||||||| |||||||||    
T  34540901 ttaaataatcttgattatgaataaattttttgcaacaaaaaatacatgaagaaatacattcaaatgattaaaagg 34540827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 31153745 - 31153604
Alignment:
Q  46 gtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgc 145  Q
    ||||| ||||||| ||||||||||||  || |||||  |||| ||||||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  31153745 gtagtcagtactatatagatatatttaattttaaatccttttaattaattatattgaaaatatgtttttaaataactttgatcatgaatgaatcttttgc 31153646  T
Q  146 aataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    |||||||||| || ||  ||| ||| ||||||||||||||||    
T  31153645 aataaaaaatgcaagagaaaaaacactcaaataattaaaagg 31153604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 12174315 - 12174534
Alignment:
Q  17 ggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaa 116  Q
    ||||| ||||||||||||||||     ||||||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||||     
T  12174315 ggcaccaaaattattattttta---cttagtagttagtactatatagatatatttctttttaattcgttttgattaattatattaaaaatatatttttag 12174411  T
Q  117 agaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcat 216  Q
    |||| ||| ||| | ||||||||||||| || ||||| | || |||| || | ||| |||||| |||||  ||| ||||| |||  |||||||| | ||     
T  12174412 agaactttaattgtaaatgaatcttttgtaacaaaaactgcaagaaggaaaatattgaaataaataaaacaacacaattttattgtttcgtccatgacac 12174511  T
Q  217 taaaaatcttaggaccggccctg 239  Q
     |||||||| || ||| ||||||    
T  12174512 caaaaatctcagaaccagccctg 12174534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 31236976 - 31236882
Alignment:
Q  138 tcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccg 233  Q
    |||||||||||||||||| || |||||||||||| ||||||||||||| |||| ||||| |||||||||||||||||| | |||||||||||||||    
T  31236976 tcttttgcaataaaaaatgcaagaagaaagacat-caaataattaaaatgacacaattttattaattcgtccagggcacttaaaatcttaggaccg 31236882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 229
Target Start/End: Original strand, 33344881 - 33345024
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| |||||||||||| |||||| | || ||||||||| ||||||| |||||||| ||||||| |  ||||||| | |||  ||||||||||    
T  33344881 tttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaaa 33344980  T
Q  185 aggacataatttcattaattcgtccagggcattaaaaatcttagg 229  Q
    ||| |||||||| |||  |||||||||||||  ||||||||||||    
T  33344981 agggcataattt-attgtttcgtccagggcaccaaaaatcttagg 33345024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 233
Target Start/End: Complemental strand, 31246352 - 31246258
Alignment:
Q  138 tcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccg 233  Q
    |||||||||||||||||| || ||| |||||||| ||||||||||||| |||| ||||| |||||||||| ||||||| | |||||||||||||||    
T  31246352 tcttttgcaataaaaaatgcaagaataaagacat-caaataattaaaatgacacaattttattaattcgttcagggcacttaaaatcttaggaccg 31246258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 239
Target Start/End: Complemental strand, 35122016 - 35121864
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| |||||||||||| |||||| | || ||||||||| ||||||| ||||||||  |||||| |  ||||||| | |||  ||||||||||    
T  35122016 tttgattaattctattgaaaatatatttttagataactttgattataaatgaatattttgcaa-caaaaatgctagaagaaaaatatttgaataattaaa 35121918  T
Q  185 aggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    ||| |||||||| |||  |||||||||||||  |||||||||||| | |||||||    
T  35121917 agggcataattt-attgtttcgtccagggcaccaaaaatcttagggctggccctg 35121864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 34573316 - 34573197
Alignment:
Q  23 aaaattattatttttatgtagtagtagttagtactacatagatatat--ttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaa 120  Q
    ||||||||||||||||| |||||||   || || || ||||||||||  |||||| ||| | | ||||||||||| |||||||||||| |||||||||||    
T  34573316 aaaattattatttttatttagtagt---taatattatatagatatatatttctttttaattcggtttgattaattttattgaaaatatatttttaaagaa 34573220  T
Q  121 ttttgattatgaatgaatctttt 143  Q
     ||||||||| ||||||||||||    
T  34573219 ctttgattataaatgaatctttt 34573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 11274605 - 11274712
Alignment:
Q  77 taaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaa 176  Q
    ||||||| |||||||||||||||||| || || |||||| |||||||||||||||||||||| |||||||| ||||| |||| ||| ||| |||||  ||    
T  11274605 taaattgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaacaaaaagtacaagaaaaaaaacattggaa 11274703  T
Q  177 taattaaaa 185  Q
    || ||||||    
T  11274704 tagttaaaa 11274712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 233
Target Start/End: Complemental strand, 21954576 - 21954405
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    |||| ||||||||||| ||| |||||||||||||||  |||||||| || ||||| ||||   || ||||||||| | |||||||||| ||||||||||     
T  21954576 atagttatatttctttttaacttgttttgattaattccattgaaaaaatattttttaagagccttaattatgaataagtcttttgcaacaaaaaatacaa 21954477  T
Q  160 gaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccg 233  Q
     || |||||| ||  ||||| |  |||||||||| || ||| ||||||| | ||||  ||||||||||||||||    
T  21954476 aaacaaagacgttggaataact--aaggacataactttattgattcgtctaaggcacaaaaaatcttaggaccg 21954405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 5608079 - 5608173
Alignment:
Q  92 aattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    |||| |||||| ||||| ||| || |||||||||||||||||||| ||||||| || |||||||| |  ||||||||||||||||||||| |||||    
T  5608079 aattctattgagaatatatttctagagaattttgattatgaatga-tcttttgtaacaaaaaatataaaaagaaagacattcaaataatttaaagg 5608173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 34329892 - 34329781
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| |||||||||||| |||||| |||| |||| |||| |||  ||||||||||| ||||||| || ||||||| | |||  ||||||||||    
T  34329892 tttgattaattctattgaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaaa 34329793  T
Q  185 aggacataattt 196  Q
    ||| ||| ||||    
T  34329792 agggcatgattt 34329781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 239
Target Start/End: Complemental strand, 9815782 - 9815592
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||| ||||| |||||||||||||||| ||| | | ||||||||| | |||||||||||| |||||| | || | ||||||| ||||| | ||||    
T  9815782 tagtagttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaatatatttttagaaaactatgattataaatgagt-tttt 9815684  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    | || ||||||| || ||||||  | |||  ||||||||||||| || ||||| |||  |||| |||| ||    |||||||| ||||||||||||    
T  9815683 gtaacaaaaaatgcaagaagaataatattagaataattaaaagggcacaattttattgtttcgcccagagc----aaaatcttgggaccggccctg 9815592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 235
Target Start/End: Complemental strand, 10903237 - 10903085
Alignment:
Q  83 gttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataatta 182  Q
    ||||||||||||||  |||||||| |  ||||||| || ||||| | ||||||||| ||   |||| ||||||  | ||||||| ||||||||||||| |    
T  10903237 gttttgattaattaagttgaaaatgtaattttaaataactttgaatgtgaatgaatgttagacaatgaaaaatgtaagaagaaaaacattcaaataatca 10903138  T
Q  183 aaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggc 235  Q
    |||||| ||||||| ||||| ||||| ||| ||  |||||  |||||||||||    
T  10903137 aaaggatataattttattaactcgtctaggacaccaaaaaatttaggaccggc 10903085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 10669016 - 10668846
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||| ||||||||||||||||     || ||||||||| || |||||||||| ||||| | ||||  |||||||||||||||||||||||| |||    
T  10669016 taggggcaccaaaattattattttta---cttattagttagtattatatagatatatatcttt-tgaattcatttgattaattatattgaaaatat-ttt 10668922  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggac 189  Q
    ||| | ||  |||||||| ||||||||| |||  | ||||||| ||  |||||| | |||  |||||||||||||||    
T  10668921 ttaga-aacgttgattataaatgaatctattgagacaaaaaatccaaaaagaaaaatattagaataattaaaaggac 10668846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 35067103 - 35067183
Alignment:
Q  126 attatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcg 206  Q
    |||||||||||||||| ||||| |||||||  | ||| ||||| ||||||||||||||||  ||||||||| ||| |||||    
T  35067103 attatgaatgaatcttatgcaagaaaaaatgtaagaaaaaagatattcaaataattaaaataacataattttattgattcg 35067183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 147
Target Start/End: Original strand, 31787837 - 31787937
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgca 146  Q
    ||||||||| ||  ||||||||||| ||| ||| | | ||||||||||| |||||||||||| ||| || | || ||| ||||| ||||||| |||||||    
T  31787837 tagttagtattaagtagatatatttatttttaattcgctttgattaattctattgaaaatatatttgtagataactttaattataaatgaatattttgca 31787936  T
Q  147 a 147  Q
    |    
T  31787937 a 31787937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 15989387 - 15989354
Alignment:
Q  123 ttgattatgaatgaatcttttgcaataaaaaata 156  Q
    |||||||||||||||||||| |||||||||||||    
T  15989387 ttgattatgaatgaatctttcgcaataaaaaata 15989354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 32331612 - 32331535
Alignment:
Q  89 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaa 166  Q
    ||||||| | |||||||||| |||||| ||||| ||  |||| ||| |||||||||||| |||||||| | |||||||    
T  32331612 attaattcttttgaaaatatttttttagagaatcttatttataaataaatcttttgcaacaaaaaatataagaagaaa 32331535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 9524900 - 9524836
Alignment:
Q  89 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaa 153  Q
    |||||||||||| ||| ||| ||||||| ||| || |||||| ||| |||||||| |||||||||    
T  9524900 attaattatattaaaactatatttttaatgaacttcgattataaataaatcttttacaataaaaa 9524836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 21954777 - 21954882
Alignment:
Q  126 attatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatct 225  Q
    ||||||||| | |||||||||| ||||||||||  || |||||| ||  ||||| ||||  ||||||| || ||| ||||||||||||||  || |||||    
T  21954777 attatgaataagtcttttgcaacaaaaaatacaaaaaaaaagacgttggaataactaaa--gacataactttattgattcgtccagggcacaaacaatct 21954874  T
Q  226 taggaccg 233  Q
    ||| ||||    
T  21954875 tagaaccg 21954882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 16647053 - 16646917
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    |||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||| |||||||| ||||| |||||||||| ||||| |||||||| |     
T  16647053 atagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaataaaa 16646954  T
Q  160 gaagaaagacattcaaataattaaaaggacataattt 196  Q
    ||||||| | ||| ||||||||||||||  |||||||    
T  16646953 gaagaaaaatattaaaataattaaaagggtataattt 16646917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 36186700 - 36186568
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||||||| ||| |   |||||||||||||||||||||||| |||||| |||| ||||||||| ||| |||||||||||| |||||||  ||||||    
T  36186700 atatatttctttttaattctctttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaatgtatgaag 36186601  T
Q  164 aaagacattcaaataattaaaaggacataattt 196  Q
    ||| |||||  |||||||||||||||| |||||    
T  36186600 aaaaacattagaataattaaaaggacaaaattt 36186568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 34345964 - 34346068
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    |||||||||||||||| ||| ||| |||||||| ||||||||||||||| |||||| |||||||||||| | |||||| ||||||||| ||||||||||     
T  34345964 atagatatatttcttt-taatttggtttgattagttatattgaaaatatatttttatagaattttgattctaaatgaa-cttttgcaacaaaaaatacaa 34346061  T
Q  160 gaagaaa 166  Q
    |||||||    
T  34346062 gaagaaa 34346068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 46 - 240
Target Start/End: Original strand, 16547683 - 16547879
Alignment:
Q  46 gtagttagtactacatagatatat--ttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||| |||||| ||||||||||  || ||| ||| ||| ||||||||||||||||||||||||  ||||| | || ||||||||| |||| |||||||    
T  16547683 gtagttggtactatatagatatatatttttttttaatttggtttgattaattatattgaaaatattattttagaaaactttgattataaatggatctttt 16547782  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctgc 240  Q
     ||| |||||||  | |||||||   ||| |||  |||||||||||| ||||| |||  ||||||||| |||  |||||||||||||| | ||||||    
T  16547783 acaacaaaaaatgtaagaagaaaactattgaaactattaaaaggacacaattttattgtttcgtccagagcacaaaaaatcttaggactgaccctgc 16547879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 40877033 - 40876936
Alignment:
Q  46 gtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||| || ||| |||||||||||| ||| |||||| |||||||| |||||||||||| |||||| ||||  |||||||||| ||||||||||    
T  40877033 gtagttagtattatataaatatatttctttttaacttgtttggattaattctattgaaaatatatttttatagaaccttgattatgagtgaatctttt 40876936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 5163783 - 5163922
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||  ||||||||||||||||     ||||||||||||||| ||| |||||| ||||| ||| | | |||||||||||||||||| |||||  ||    
T  5163783 taggggcatcaaaattattattttta---cttagtagttagtactatataaatatatatctttttaattcggtttgattaattatattgagaatattatt 5163879  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaat 155  Q
    ||| | || ||||||||| ||||||||||||| || |||||||    
T  5163880 ttagaaaactttgattataaatgaatcttttgtaacaaaaaat 5163922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 28556715 - 28556604
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaatt-gttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttt 142  Q
    ||||||||||||||| ||||||| ||||| || |||||| | |||||||||||||||| ||||||| ||||||||||| |||||| || || ||||||||    
T  28556715 tagtagttagtactatatagatacatttcgtt-taaattcggtttgattaattatattaaaaatatatttttaaagaactttgatgataaacgaatcttt 28556617  T
Q  143 tgcaataaaaaat 155  Q
     | ||||||||||    
T  28556616 ggaaataaaaaat 28556604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 195
Target Start/End: Complemental strand, 35280999 - 35280893
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| |||||||||||| |||||||| |||| | |||||||||||||||||| | ||||||||| || ||||||| |   | |||||||||||    
T  35280999 tttgattaattctattgaaaatatatttttaaataattatcattatgaatgaatctttttc-ataaaaaatgcaagaagaaaca---taaaataattaaa 35280904  T
Q  185 aggacataatt 195  Q
    |||||||||||    
T  35280903 aggacataatt 35280893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 158
Target Start/End: Original strand, 38561844 - 38561974
Alignment:
Q  24 aaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattt 123  Q
    |||||||||||||||| |||||||   || ||| | ||||||| |||||||| ||| |||||||||||||||  ||||||||||| |||||| |||| ||    
T  38561844 aaattattatttttatttagtagt---tattacaatatagatacatttctttttaatttgttttgattaattc-attgaaaatatttttttagagaactt 38561939  T
Q  124 tgattatgaatgaatcttttgcaataaaaaataca 158  Q
    | ||||| ||||||| || ||||| ||||||||||    
T  38561940 tcattataaatgaatattgtgcaacaaaaaataca 38561974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 30257874 - 30257779
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaat 155  Q
    ||||||||||||||||  || | | |||||||||||||||||||||||| |||||| |||| ||||||||| ||| ||||||||| || |||||||    
T  30257874 atagatatatttcttttcaattcggtttgattaattatattgaaaatatatttttagagaactttgattataaataaatcttttgaaacaaaaaat 30257779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 44157275 - 44157397
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| ||||  |||||| |||||| ||||  |||||||||||||||  |||||||  ||||| |||| ||||||| | |||||||||||||||    
T  44157275 tttgattaattctattagaaatatatttttagagaaacttgattatgaatgaaa-ttttgcagcaaaaattacaagaagaaatatattcaaataattaaa 44157373  T
Q  185 aggacataatttcattaattcgtc 208  Q
    |||||| ||||  |||||||||||    
T  44157374 aggacacaattctattaattcgtc 44157397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 18830077 - 18829934
Alignment:
Q  51 tagtactacatagatatatttctttctaaat-tgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgc---- 145  Q
    |||||||| |||||||||||||||| | ||  || | ||||||||| |||||||||||| |||||| ||||   ||||||||||||||| ||||||        
T  18830077 tagtactatatagatatatttcttttttaacatgctatgattaattttattgaaaatatatttttagagaacaatgattatgaatgaattttttgcaaaa 18829978  T
Q  146 --aataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
      || |||||||||| ||||||||||||| |||||||| |||||    
T  18829977 aaaaaaaaaaatacaagaagaaagacatttaaataattgaaagg 18829934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 17271333 - 17271258
Alignment:
Q  81 ttgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    |||||||||||||||||||||||||||| ||||||   || ||||||||| |||||||||| ||| ||||||||||    
T  17271333 ttgttttgattaattatattgaaaatatatttttagcaaactttgattataaatgaatcttgtgcgataaaaaata 17271258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 28148908 - 28149004
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctt 141  Q
    ||||| ||||||||| | |||||||| | ||| ||| | |||||||||||||||||||||||||  ||||||||||| ||||||||| ||| ||||||    
T  28148908 tagtaattagtactatagagatatatattttt-taattcgttttgattaattatattgaaaataaatttttaaagaactttgattataaattaatctt 28149004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 38608403 - 38608314
Alignment:
Q  97 tattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaag 186  Q
    |||||||||||| |||||||||||  || ||||||||| |||| ||||||| |||||||||| ||| ||| |||||  ||||||||||||    
T  38608403 tattgaaaatatatttttaaagaaccttaattatgaatcaatcatttgcaacaaaaaatacaggaataaacacatttgaataattaaaag 38608314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 15925514 - 15925694
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaa---tatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    |||||||||||||||| ||| | | ||| |||||||||||||||||   ||| ||| || | || ||| || |||| ||||||||||| || ||||||||    
T  15925514 atagatatatttctttttaactcgctttaattaattatattgaaaaaaatatatttctagaaaactttaataatga-tgaatcttttgtaacaaaaaata 15925612  T
Q  157 catgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    ||  | ||||||| ||||||||||||||| | || || |||||| ||||||  ||| ||| ||||||||||||| || |||||    
T  15925613 caaaaggaaagacgttcaaataattaaaaag-cacaacttcattgattcgtttaggacatcaaaaatcttaggatcgaccctg 15925694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 32596807 - 32596747
Alignment:
Q  126 attatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaag 186  Q
    ||||| |||||||||||| ||||||||||||||  |||||||||||| |||||||||||||    
T  32596807 attattaatgaatcttttacaataaaaaatacaaaaagaaagacattaaaataattaaaag 32596747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 38134092 - 38134232
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||| |||||| ||||  |||||| ||| | | |||||||||||||||| ||||||| |||||| ||||  ||  ||| |||||||||||||    
T  38134092 tagtagttagtagtacataaatat--ttctttttaactcgatttgattaattatattaaaaatat-tttttagagaaccttatttacgaatgaatctttt 38134188  T
Q  144 gcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    |||| |||||||  | ||| |||||||||  ||||| |||||||    
T  38134189 gcaacaaaaaatgtaagaaaaaagacatttgaataactaaaagg 38134232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 32415357 - 32415463
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||||||| ||| |  |||||||||||| ||||||| ||||  ||||| ||||  | ||||||||||| ||||||||||| ||||||||||  ||     
T  32415357 atatatttctttttaactcattttgattaattttattgaatatat--ttttagagaacctcgattatgaatgcatcttttgcaacaaaaaatacagaaaa 32415454  T
Q  164 aaagacatt 172  Q
    |||||||||    
T  32415455 aaagacatt 32415463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 40705952 - 40705888
Alignment:
Q  123 ttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    |||||||  ||| ||| ||||| |||||||||| || ||||||||||||||||||||||||||||    
T  40705952 ttgattacaaataaattttttgtaataaaaaatgcaagaagaaagacattcaaataattaaaagg 40705888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 26350509 - 26350434
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatga 161  Q
    ||||||||||| |||||||||||| |||||||| || |||  |||||||||||| |||||||  |||||||| ||||    
T  26350509 tttgattaattttattgaaaatat-tttttaaaaaactttatttatgaatgaattttttgcagcaaaaaatatatga 26350434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 38035390 - 38035331
Alignment:
Q  84 ttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||| ||| | ||||||||||||  | |||||||||||||||||||||| ||||||||    
T  38035390 ttttgactaaatttattgaaaatatactattaaagaattttgattatgaataaatctttt 38035331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 38565256 - 38565174
Alignment:
Q  102 aaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    ||||||| |||||||||||  || ||||||||  |||||||||  | ||||||| ||  |||||||||||||||||||||||||    
T  38565256 aaaatatatttttaaagaaccttaattatgaactaatcttttgtta-aaaaaatccaaaaagaaagacattcaaataattaaaa 38565174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 33510207 - 33510096
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||||| |||||||||||||||||||| ||| | |||||||||||||  ||||||||||| |||||| |||| ||| ||||| ||||||||||||    
T  33510207 tagtagttagtgctacatagatatatttctttttaattcgttttgattaattccattgaaaatatatttttagagaactttaattataaatgaatctttt 33510108  T
Q  144 gcaataaaaaat 155  Q
    |||| |||||||    
T  33510107 gcaacaaaaaat 33510096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 158
Target Start/End: Original strand, 15670937 - 15671051
Alignment:
Q  44 tagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    ||||||||| ||| | |||||||||||||||| ||| ||||||||||||||| |||||||||||| |||||| | || ||||||||| |||||||||| |    
T  15670937 tagtagttattacaatatagatatatttctttttaatttgttttgattaattctattgaaaatatctttttagaaaactttgattataaatgaatcttgt 15671036  T
Q  144 gcaataaaaaataca 158  Q
    |||| |||| |||||    
T  15671037 gcaacaaaatataca 15671051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 47 - 210
Target Start/End: Complemental strand, 33682769 - 33682606
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgca 146  Q
    |||||||||||| |||||||||||||||| ||| |   ||||||||||| |||| ||||||| |||||||||||  |||| ||| || |||||||||| |    
T  33682769 tagttagtactagatagatatatttctttttaattcactttgattaattctattaaaaatatttttttaaagaaccttgactataaaggaatcttttgta 33682670  T
Q  147 ataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtcca 210  Q
    | || |||| |  |||||||||||||| || |||||||||| || || || ||| |||||||||    
T  33682669 acaacaaatgctagaagaaagacattcgaaaaattaaaagggcacaactttattgattcgtcca 33682606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 54417130 - 54417032
Alignment:
Q  46 gtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttg 144  Q
    ||||||||| ||| ||||||| ||||| || ||| |   ||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||    
T  54417130 gtagttagtgctatatagatacatttccttttaattcactttgattaattctactgaaaatatgtttttaaagaattttgattataaatgaatcttttg 54417032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 39838489 - 39838599
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaa-ttttgattatgaatgaatcttttgc 145  Q
    |||||||||||  ||| |||||||||||| ||| |  || |||||||||||||||||||||  |||||||||||  ||||||||||||||||||||||||    
T  39838489 tagttagtactgtataaatatatttctttttaactcattatgattaattatattgaaaata--tttttaaagaacctttgattatgaatgaatcttttgc 39838586  T
Q  146 aataaaaaataca 158  Q
    || |||| |||||    
T  39838587 aacaaaagataca 39838599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 87 - 231
Target Start/End: Complemental strand, 168752 - 168610
Alignment:
Q  87 tgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaag 186  Q
    ||||||||| |||||||||||| |||| | ||||  |||||||||||||||||||||| || ||||||| ||  |||||||| |||  ||||||| ||||    
T  168752 tgattaattctattgaaaatatatttt-agagaaccttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaagaaattagaataatt-aaag 168655  T
Q  187 gacataatttcattaattcgtccagggcattaaaaatcttaggac 231  Q
    ||   || || ||| ||||||||||||||| ||||||||||||||    
T  168654 gatgcaactttattgattcgtccagggcataaaaaatcttaggac 168610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 11365107 - 11365218
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    |||||||||||  |||||||| || |||||||| || ||||||||| ||||||| |||||||| ||||||| || ||||||| | |||  ||||||||||    
T  11365107 tttgattaattcaattgaaaagatatttttaaataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaa 11365206  T
Q  185 aggacataattt 196  Q
    |||| |||||||    
T  11365207 aggatataattt 11365218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 17713325 - 17713405
Alignment:
Q  77 taaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||||||| |||||||||||||||||| || || |||||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  17713325 taaattgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaagaaaaagtaca 17713405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 19014554 - 19014634
Alignment:
Q  77 taaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||||||| |||||||||||||||||| || || |||||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  19014554 taaattgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaagaaaaagtaca 19014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 196
Target Start/End: Complemental strand, 47000934 - 47000824
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| ||||||||| || |||||| | |||||||||||| ||||||| |||||||| |||||||| | ||||||| | ||| |||| ||||||    
T  47000934 tttgattaattctattgaaaa-atatttttagataattttgattataaatgaatattttgcaacaaaaaatataagaagaaaaatatttaaatgattaaa 47000836  T
Q  185 aggacataattt 196  Q
    ||| || |||||    
T  47000835 agggcacaattt 47000824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 158
Target Start/End: Complemental strand, 27538879 - 27538781
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    |||||||||||| ||| ||| |   ||||||||||| |||||||||||| |||||||| || ||||||||  ||||||| |||||||| ||||||||||    
T  27538879 atagatatatttatttttaattctctttgattaattctattgaaaatatatttttaaataactttgattagaaatgaatattttgcaacaaaaaataca 27538781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 2758070 - 2758238
Alignment:
Q  17 ggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaa 116  Q
    ||||| ||||||||||||||||   | ||||||||||||||| ||| | |||||||||| ||| | |||||||||| || || |||| |||| ||||||     
T  2758070 ggcaccaaaattattattttta---attagtagttagtactatataaacatatttctttttaactagttttgattatttctaatgaatatatatttttac 2758166  T
Q  117 agaattttgattatgaatgaatcttttgcaata-aaaaatacat-gaagaaagacattcaaataattaaaag 186  Q
    | ||  ||| |||||||||||||||||  || | ||||| | ||  |||||| |||||||||||||||||||    
T  2758167 ataaccttggttatgaatgaatctttttaaaaagaaaaaaaaatacaagaaaaacattcaaataattaaaag 2758238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 8266648 - 8266560
Alignment:
Q  100 tgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagga 188  Q
    |||||||||||||| | ||||  |||||||| |||||| ||||| ||| ||||||||||  |||| ||||||| |||||||||||||||    
T  8266648 tgaaaatatgttttcagagaaccttgattattaatgaaccttttacaacaaaaaatacaaaaagagagacatttaaataattaaaagga 8266560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 232
Target Start/End: Original strand, 33290759 - 33290906
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| |||||||  ||| |||||| |||| |||||| || |||||||||| ||||| ||||||  || | ||||| | ||| |||||||||||    
T  33290759 tttgattaattttattgaat-tatatttttagagaactttgatcataaatgaatcttgtgcaacaaaaaacgcaaggagaaaaatattgaaataattaaa 33290857  T
Q  185 aggacataatttcattaattcgtccagggca-ttaaaaatcttaggacc 232  Q
    | ||||||| || |||  ||||||||| |||   |||||||||||||||    
T  33290858 aagacataactttattgtttcgtccagagcacaaaaaaatcttaggacc 33290906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 46744005 - 46744081
Alignment:
Q  83 gttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    ||||||||||||| |||| ||||||| |||||  ||||  || |||||||||||||||||||||| |||||| ||||    
T  46744005 gttttgattaattctattaaaaatatatttttgtagaaccttaattatgaatgaatcttttgcaaaaaaaaagacat 46744081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 11383585 - 11383803
Alignment:
Q  16 gggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttct--aaattgttttgattaattatattgaaaatatgtttt 113  Q
    |||||| ||||||||||||||||| |||||||   ||||| || ||| |||||| | | |||  || | | |||||||||||  |||||||| || ||||    
T  11383585 gggcaccaaaattattatttttatttagtagt---tagtaatatatatatatatatatatctttaattcgctttgattaattcaattgaaaaaatatttt 11383681  T
Q  114 taaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccaggg 213  Q
    || | || ||||||||| ||||||| |||||||| ||||||| |   || ||| | ||| ||||||||||||||  | ||||| ||   |||||||||||    
T  11383682 tagataactttgattataaatgaatattttgcaacaaaaaatgc---aataaaaatatttaaataattaaaagggtacaattt-atagtttcgtccaggg 11383777  T
Q  214 cattaaaaatcttaggaccggccctg 239  Q
    ||  |||||||||| | |||||||||    
T  11383778 caccaaaaatcttaaggccggccctg 11383803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 7741735 - 7741798
Alignment:
Q  62 agatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttg 125  Q
    |||||||||||||| ||| |  |||||||||||| | ||||||||||||||||| ||| |||||    
T  7741735 agatatatttctttttaactcattttgattaattttgttgaaaatatgtttttagagagttttg 7741798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 16675819 - 16675760
Alignment:
Q  84 ttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||| ||||||| |||||| ||||| |||||||| |||||||||||  ||||||||||||    
T  16675819 ttttaattaattttattgagaatatatttttaaataattttgattacaaatgaatctttt 16675760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 39630317 - 39630376
Alignment:
Q  84 ttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||| |||| || ||||||||||||  ||||||||||| || ||||||||||||||||||    
T  39630317 ttttaattagttttattgaaaatatacttttaaagaatcttaattatgaatgaatctttt 39630376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 84156 - 84079
Alignment:
Q  81 ttgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    |||||||||||||||  ||| ||||||| |||||| |||||||||||| | ||||||| |||| | |||||||| ||||    
T  84156 ttgttttgattaattgaattaaaaatatatttttagagaattttgatt-taaatgaattttttacgataaaaaagacat 84079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 13580496 - 13580286
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||| ||||||||||||||||     || ||||||||| || ||| |||||||||||| ||| | | ||||||||||| |||||||||||| |||    
T  13580496 taggggcaccaaaattattattttta---cttaatagttagtattatataaatatatttctttttaattcgctttgattaattctattgaaaatatattt 13580400  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagg 212  Q
    ||||| || |||| |||| ||||||| |||||||| ||||||| || ||  ||| | |||  |||||||||||| ||||||||| |||  ||||||||||    
T  13580399 ttaaataactttggttataaatgaatattttgcaacaaaaaatgcaagacaaaaaatattagaataattaaaagaacataattt-attgtttcgtccagg 13580301  T
Q  213 gcattaaaaatctta 227  Q
     ||  ||||||||||    
T  13580300 acaccaaaaatctta 13580286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 41849442 - 41849540
Alignment:
Q  86 ttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    |||||||||| |||||||||||| |||||||||||| |||||||| |||||||||||| ||| |||||| |||  |||||||||||||||||||||||||    
T  41849442 ttgattaattctattgaaaatatatttttaaagaatcttgattattaatgaatctttttcaacaaaaaa-acaaaaagaaagacattcaaataattaaaa 41849540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 26835732 - 26835590
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||| ||||||||||||||||     || |||||||||| | ||| |||||||||||| ||| ||  ||| ||||||| |||||||||||| |||    
T  26835732 taggggcaccaaaattattattttta---cttaatagttagtacaatataaatatatttctttttaattttcttttattaattctattgaaaatatattt 26835636  T
Q  113 ttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||| |||| ||||||||| |||||||||| ||||| ||||||||||    
T  26835635 ttagagaactttgattataaatgaatcttgtgcaacaaaaaataca 26835590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 187
Target Start/End: Original strand, 43872544 - 43872669
Alignment:
Q  62 agatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatga 161  Q
    |||||||||||||  ||| ||| ||| ||||||| ||||| |||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||  |    
T  43872544 agatatatttcttcttaatttgctttcattaattctattgtaaatatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaatacaaaa 43872643  T
Q  162 agaaagacattcaaataattaaaagg 187  Q
    ||||| | |||  |||||||||||||    
T  43872644 agaaaaatattagaataattaaaagg 43872669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 36042938 - 36042839
Alignment:
Q  81 ttgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataat 180  Q
    ||||||||||||||| |||| ||||||| |||| ||||||  |||||||||||| ||| |||||||| |||||||||| ||||||||| |||||||||||    
T  36042938 ttgttttgattaattttatttaaaatatatttt-aaagaaccttgattatgaattaattttttgcaacaaaaaatacaagaagaaagaaattcaaataat 36042840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 22486689 - 22486596
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaa 153  Q
    |||||||| ||||||| ||| ||||||||||||||| ||||||||||||  ||||| |||| ||||||||| |||||||||| ||||| |||||    
T  22486689 atagatatgtttctttttaatttgttttgattaattctattgaaaatatcattttagagaactttgattataaatgaatcttgtgcaaaaaaaa 22486596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 215
Target Start/End: Original strand, 13236221 - 13236372
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||||||| ||| | | ||||||||||| || ||||||||| |||||| |||| ||||||||| || |||| |||||||| ||| ||| || ||||    
T  13236221 atatatttctttttaattcgctttgattaattctaatgaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataatgcaagaag 13236320  T
Q  164 aaagacattcaaataattaaaaggacataatttcattaattcgtccagggca 215  Q
    ||| | |||  ||||||||||| | |||||||| |||  ||| |||||||||    
T  13236321 aaaaatattggaataattaaaatggcataattttattgtttcatccagggca 13236372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 21347573 - 21347500
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||||||||||| |||||||||||| |||||||| || ||||||||| |||||||||| |||||| |||||||||    
T  21347573 tttgattaattctattgaaaatatatttttaaataaatttgattataaatgaatcttgtgcaatcaaaaataca 21347500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 34142015 - 34142112
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttt 112  Q
    ||||||||| |||| |||||||||||| ||||   ||||||||||| |||||||||||||||| |||   | ||||||||||| |||||||||||| |||    
T  34142015 taggggcaccaaaactattatttttatttagt---agttagtactatatagatatatttctttttaatccgctttgattaattctattgaaaatatattt 34142111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 12181872 - 12181952
Alignment:
Q  77 taaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||||||| ||||| |||||||||||| || || |||||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  12181872 taaattgctttgactaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaacaaaaagtaca 12181952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 12426300 - 12426380
Alignment:
Q  77 taaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaataca 158  Q
    ||||||| ||||| |||||||||||| || || |||||| |||||||||||||||||||||| |||||||| ||||| ||||    
T  12426300 taaattgctttgactaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaacaaaaagtaca 12426380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 18987265 - 18987181
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttg 144  Q
    |||||||||||||||| ||| |   |||||||||||||||||||| ||| |||||| |||| |||||| |||||| |||||||||    
T  18987265 atagatatatttctttgtaattatgtttgattaattatattgaaattatatttttagagaactttgataatgaattaatcttttg 18987181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 22930343 - 22930439
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||| |||||||||| ||||| ||| | | ||||||||||| ||||||||| || |||||| | || ||||||||| ||||||| ||||    
T  22930343 tagttagtactatatagatatatatctttttaattcgctttgattaattctattgaaaaaatatttttagataactttgattataaatgaatatttt 22930439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 24606846 - 24606936
Alignment:
Q  99 ttgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
    |||||||||| ||||||||||| |||  |||| |||||||||||||||  |||||||  | ||||||||||||| |||||| ||||||||||    
T  24606846 ttgaaaatat-tttttaaagaactttatttataaatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaaaaggaca 24606936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 17786598 - 17786508
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaa 154  Q
    |||||||||||| ||| | | |||||||||| ||||| ||||| | |||||  |||||||||||||||||| ||| |||||||| ||||||    
T  17786598 atatatttctttttaactcgctttgattaatcatattaaaaatctatttttgtagaattttgattatgaataaatattttgcaacaaaaaa 17786508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 26801912 - 26802053
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    |||||||||||||||||||| ||| || ||| ||||  |||||||| || || || ||||||| |||||||  |  |||||| |||||||||||||||||    
T  26801912 tttgattaattatattgaaa-tatattattagagaacattgattataaacgagtcctttgcaacaaaaaatttaataagaaaaacattcaaataattaaa 26802010  T
Q  185 aggacataatttcattaattcgtccagggcattaaaaatctta 227  Q
    ||| || || || ||| ||||  || |||||| ||||||||||    
T  26802011 agggcacaacttgatttattcacccggggcataaaaaatctta 26802053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 34142146 - 34142266
Alignment:
Q  119 aattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcatta 218  Q
    |||||||||||| ||||||| |||  ||| ||||||| || ||| ||| | ||| ||||||||||||||  | ||||| |||  ||||||||| |||| |    
T  34142146 aattttgattataaatgaatatttatcaacaaaaaatgcacgaaaaaaaa-attaaaataattaaaagggtacaattt-attgtttcgtccagagcatca 34142243  T
Q  219 aaaatcttaggaccggccctgca 241  Q
    |||||||||||||||||||||||    
T  34142244 aaaatcttaggaccggccctgca 34142266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 31277948 - 31278049
Alignment:
Q  85 tttgattaattatattgaaaatatgt-ttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaa 183  Q
    ||||||||||| |||||||||||| | ||||| ||||  |||||||| |||||||||||||||   |||||| || ||||||||| |||| |||||| ||    
T  31277948 tttgattaattctattgaaaatatttattttagagaaccttgattataaatgaatcttttgcacctaaaaattcaagaagaaagagattcgaataataaa 31278047  T
Q  184 aa 185  Q
    ||    
T  31278048 aa 31278049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 32646649 - 32646581
Alignment:
Q  84 ttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaa 152  Q
    |||| ||||||| |||| ||||||| |||||||||||| || ||||| ||||||||| |||||||||||    
T  32646649 ttttaattaattttattaaaaatatatttttaaagaatcttaattataaatgaatctcttgcaataaaa 32646581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 35481116 - 35480977
Alignment:
Q  41 tagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaat-atgtttttaaagaattttgattatgaatgaatc 139  Q
    |||| ||||||||||||| ||||||| |||||||  |||   | ||| | ||||| |||||||||| || |||||| ||||  |||||||| ||  ||||    
T  35481116 tagtggtagttagtactatatagataaatttcttattaacccgctttcaataattctattgaaaatgatatttttagagaacattgattataaaaaaatc 35481017  T
Q  140 ttttgcaataaaaaatacatgaagaaagacattcaaataa 179  Q
    |||||||| |||||||||| ||||||| | |||| |||||    
T  35481016 ttttgcaacaaaaaatacaagaagaaaaatattcgaataa 35480977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 7255474 - 7255567
Alignment:
Q  97 tattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataa-aaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
    ||||||||||||||||||| ||||  | |||||| ||||||| |||| ||| || |||| ||| ||||||||||||| | |||||||||||||||    
T  7255474 tattgaaaatatgtttttagagaacat-gattataaatgaatattttacaaaaagaaaaaacaagaagaaagacatttatataattaaaaggaca 7255567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 28376652 - 28376725
Alignment:
Q  17 ggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaa 93  Q
    ||||| ||||||||||||||||     ||||||||||||||| |||||||||||||||| ||| | |||||||||||    
T  28376652 ggcaccaaaattattattttta---cttagtagttagtactatatagatatatttctttttaattcgttttgattaa 28376725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 159
Target Start/End: Original strand, 31383538 - 31383608
Alignment:
Q  89 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacat 159  Q
    ||||||| ||||||||||||| |||||   || ||||| ||||||||||||||||||||  ||||||||||    
T  31383538 attaattttattgaaaatatggttttagctaactttgaatatgaatgaatcttttgcaacgaaaaatacat 31383608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 4350805 - 4350580
Alignment:
Q  17 ggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatt---tctttctaaattgttttgattaattatattgaaaatatgtttt 113  Q
    ||||| ||||||||||||||||| |||||||   ||||| || |||||||||||   | ||| ||| | | |||| |||||| |||||||||||| ||||    
T  4350805 ggcaccaaaattattatttttatttagtagt---tagtattatatagatatattatttttttttaattcgctttggttaattctattgaaaatatatttt 4350709  T
Q  114 taaagaattttgattatgaat----gaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtcc 209  Q
    || | || |||||||||  ||    |||| |||| ||| ||||||| || ||| ||| | ||| ||||||||||||||  | ||||| |||  |||||||    
T  4350708 tatataactttgattatatataaacgaatatttttcaacaaaaaatgcaagaaaaaaaatattaaaataattaaaagggtacaattt-attgtttcgtcc 4350610  T
Q  210 agggcattaaaaatcttaggaccggccctg 239  Q
    ||| ||  ||||||| ||||||| ||||||    
T  4350609 aggacacgaaaaatcctaggaccagccctg 4350580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 32349536 - 32349620
Alignment:
Q  85 tttgattaattatattgaaaatatgt-ttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaaga 168  Q
    ||||||||||| |||||||||||| | ||||| ||||  ||||||||| |||||||||||||| | | |||| || |||||||||    
T  32349536 tttgattaattctattgaaaatatttcttttagagaacattgattatggatgaatcttttgcacttacaaattcaagaagaaaga 32349620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 32366197 - 32366281
Alignment:
Q  85 tttgattaattatattgaaaatatgt-ttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaaga 168  Q
    ||||||||||| |||||||||||| | ||||| ||||  ||||||||| |||||||||||||| | | |||| || |||||||||    
T  32366197 tttgattaattctattgaaaatatttcttttagagaacattgattatggatgaatcttttgcacttacaaattcaagaagaaaga 32366281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 9052948 - 9053039
Alignment:
Q  97 tattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagga 188  Q
    |||||||||||| | |||| ||||  |||||||||||||| |||||| ||| |||||||     |||||| ||||| |||||||||||||||    
T  9052948 tattgaaaatatatatttagagaaccttgattatgaatgattcttttacaacaaaaaatgtgaaaagaaatacatttaaataattaaaagga 9053039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 9191229 - 9191312
Alignment:
Q  60 atagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||| ||| ||| |   ||||||||||| |||| ||||||| |||||| |||| | ||||||| ||||||||||||    
T  9191229 atagatatatttatttttaattcactttgattaattctattcaaaatatatttttagagaactatgattataaatgaatctttt 9191312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 32036874 - 32036945
Alignment:
Q  164 aaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggc 235  Q
    |||||||||||||||||||||| || | || || ||| |||||  | |||||| ||||||||||||||||||    
T  32036874 aaagacattcaaataattaaaatgatacaactttattgattcgctccgggcatcaaaaatcttaggaccggc 32036945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 140 - 187
Target Start/End: Complemental strand, 39295520 - 39295473
Alignment:
Q  140 ttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    |||||||| ||||| |||||||||||| |||||| |||||||||||||    
T  39295520 ttttgcaacaaaaattacatgaagaaacacattcgaataattaaaagg 39295473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 44816628 - 44816679
Alignment:
Q  92 aattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||||| || ||| ||||||| ||||||||||||||| ||||||    
T  44816628 aattatattgaaaacatatttctaaagaagtttgattatgaatgactctttt 44816679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 1240418 - 1240646
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaata----t 108  Q
    ||||||||| ||||||||||||||||     ||||||||||||||| ||| |||||||||||| |||   | ||||||||||| |||||||||||    |    
T  1240418 taggggcactaaaattattattttta---cttagtagttagtactatataaatatatttctttttaatccgctttgattaattctattgaaaatatattt 1240514  T
Q  109 gtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtc 208  Q
     |||||| |||| || |||||| |||||||||||||||| ||||||| || ||||||| | ||    |||||||||||| || ||||| |||  ||||||    
T  1240515 ttttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttattgtttcgtc 1240614  T
Q  209 cagggcattaaaaatcttaggaccggccctgc 240  Q
    || ||||  || ||||||||||||| ||||||    
T  1240615 caaggcaccaagaatcttaggaccgtccctgc 1240646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 51 - 238
Target Start/End: Complemental strand, 15103150 - 15102967
Alignment:
Q  51 tagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataa 150  Q
    |||||||| |||||||||||||||| ||  ||||||||||||||| |||||||   || |||||| |||| ||||||||| |||||||||| ||||| ||    
T  15103150 tagtactatatagatatatttctttttactttgttttgattaattctattgaagtaatatttttagagaactttgattataaatgaatcttgtgcaacaa 15103051  T
Q  151 aaaatacatgaagaaagacattcaaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccct 238  Q
    |||||||   |||||| | ||| ||||||||||||| ||| ||||| |||  |||| | | ||||  ||||| |||||||||||||||    
T  15103050 aaaatac---aagaaa-atattgaaataattaaaagaacacaattttattgtttcgcctatggcaccaaaaaacttaggaccggccct 15102967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 33735885 - 33735750
Alignment:
Q  16 gggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttttta 115  Q
    |||||| |||||||||| |||||| |||||||   ||||| |  ||| |||||||||||| ||| ||| |||||||||||||||||||||||| ||||||    
T  33735885 gggcactaaaattattaattttatctagtagt---tagtattgtataaatatatttctttttaatttggtttgattaattatattgaaaatatattttta 33735789  T
Q  116 aagaattttgattatgaatgaatcttttgcaataaaaaa 154  Q
     | || ||||||||| |||||||||||||| | ||||||    
T  33735788 gacaactttgattataaatgaatcttttgccaaaaaaaa 33735750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 185
Target Start/End: Complemental strand, 35204295 - 35204188
Alignment:
Q  77 taaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaa 176  Q
    ||||||| |||||||||||||||||| || || |||||| |||||||||||||||||||||| |||||||||||||| |||| ||| ||| |||||  ||    
T  35204295 taaattgctttgattaattatattgacaa-atatttttagagaattttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaacattggaa 35204197  T
Q  177 taattaaaa 185  Q
    |||||||||    
T  35204196 taattaaaa 35204188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 3265572 - 3265435
Alignment:
Q  47 tagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgca 146  Q
    ||||||||| || |||||||||||||||| ||| |   |||||| |||| |  |||||||||||||| | |||| ||| ||||| |||||||||||||||    
T  3265572 tagttagtattaaatagatatatttctttttaactccctttgat-aattcttatgaaaatatgttttaagagaacttttattatcaatgaatcttttgca 3265474  T
Q  147 ataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    | ||||||| || |||||||||||||| |||||||||||    
T  3265473 acaaaaaatgcacgaagaaagacattcgaataattaaaa 3265435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 38742466 - 38742559
Alignment:
Q  97 tattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
    |||||||||||| |||||| |||| ||||||||||||| |||||||| ||| ||||||| || | | |||||||||||||| ||||||||||||    
T  38742466 tattgaaaatatatttttagagaactttgattatgaattaatcttttacaaaaaaaaatgcagggaaaaagacattcaaatcattaaaaggaca 38742559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 49762519 - 49762375
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaa 184  Q
    ||||||||||| |||||||||||| |||||| |||| ||||||||| ||||| | || || || |||||||| | ||||||| | |||  ||||||||||    
T  49762519 tttgattaattctattgaaaatatatttttagagaactttgattataaatgagttttgtgtaacaaaaaatataagaagaaa-atattagaataattaaa 49762421  T
Q  185 aggacataatttcattaattcgtccagggcattaaaaatcttagga 230  Q
    | |||| ||||| |||  |||||||| ||||| |||||||||||||    
T  49762420 aagacacaattttattgtttcgtccaaggcatcaaaaatcttagga 49762375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 8246854 - 8246760
Alignment:
Q  17 ggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttttt 114  Q
    ||||| ||||||||||||||||     || |||||||||||| |||||||||||||||| ||| ||| ||||||||||| |||||||||||| |||||    
T  8246854 ggcaccaaaattattattttta---cttaatagttagtactatatagatatatttctttttaatttgatttgattaattctattgaaaatatattttt 8246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 187
Target Start/End: Original strand, 35405375 - 35405498
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaag 163  Q
    |||||||||||| ||| | | |||||||||||||||| |||| || |||||| | || ||||||||  ||||||| |||||||| ||||||| || ||||    
T  35405375 atatatttctttttaattcgctttgattaattatatttaaaaaatatttttagataactttgattagaaatgaatattttgcaacaaaaaatgcaagaag 35405474  T
Q  164 aaagacattcaaataattaaaagg 187  Q
    ||| | |||  |||||||||||||    
T  35405475 aaaaatatttgaataattaaaagg 35405498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 4626600 - 4626526
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatga-atcttttgcaataaaaaataca 158  Q
    ||||||||||| |||||||||||| |||||||| ||  || ||||||||||| ||||||||||||||||||||||    
T  4626600 tttgattaattctattgaaaatatatttttaaaaaaccttaattatgaatgagatcttttgcaataaaaaataca 4626526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 1153860 - 1153694
Alignment:
Q  15 ggggcacaaaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgttttt 114  Q
    ||||||| | ||||||||||||||| |||||||   ||||| || |||| ||||||| ||| ||| |  |||  ||||||| |||| ||||||||||||     
T  1153860 ggggcaccacaattattatttttatttagtagt---tagtattaaatagttatatttgtttttaactccttta-attaattctattaaaaatatgtttta 1153765  T
Q  115 aaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    | |||| ||||||| | ||| |||||||||||| ||||||  || ||||||||| ||||  ||||||||||    
T  1153764 agagaactttgattttcaattaatcttttgcaacaaaaaacgcaagaagaaagatattcggataattaaaa 1153694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 22667261 - 22667153
Alignment:
Q  88 gattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagg 187  Q
    |||||||| |||||||||| | |||||  | || ||||||||| ||||||| |||||||||||||||| || ||||||| | |||  |||||||||||||    
T  22667261 gattaattctattgaaaatttatttttggataactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaagg 22667162  T
Q  188 acataattt 196  Q
      |||||||    
T  22667161 gtataattt 22667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 4626969 - 4626894
Alignment:
Q  79 aattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaata 156  Q
    ||||||||||||||||||||||||||||||  ||||| | | ||||  |||||||||| |||||||||| ||||||||    
T  4626969 aattgttttgattaattatattgaaaatattattttagatactttt--ttatgaatgattcttttgcaacaaaaaata 4626894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 20756780 - 20756837
Alignment:
Q  131 gaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaagga 188  Q
    ||||||||||||||||||||| ||||||  ||||||||||||| ||||| ||||||||    
T  20756780 gaatgaatcttttgcaataaagaatacaataagaaagacattcgaataagtaaaagga 20756837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 36382975 - 36383038
Alignment:
Q  122 tttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    ||||||||||||||||| |||  ||| |||||||  ||||||||| ||||||||||||||||||    
T  36382975 tttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaa 36383038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 10976179 - 10976117
Alignment:
Q  93 attatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaat 155  Q
    |||||||||||||||| |||||| | || ||||||||| ||| |||||||| |||||||||||    
T  10976179 attatattgaaaatatatttttataaaactttgattataaataaatcttttacaataaaaaat 10976117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Original strand, 44807382 - 44807440
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatctttt 143  Q
    |||||||||||||||||| ||||| | ||| |||||| |||||||||||| ||||||||    
T  44807382 tttgattaattatattgataatatatatttcaagaatattgattatgaataaatctttt 44807440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 30718180 - 30718241
Alignment:
Q  124 tgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaa 185  Q
    ||||||||||||||| ||||  |  |||||||| | ||||||||||||||||||||||||||    
T  30718180 tgattatgaatgaattttttcaacaaaaaaatataagaagaaagacattcaaataattaaaa 30718241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 153
Target Start/End: Complemental strand, 45012877 - 45012809
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaa 153  Q
    ||||||||||| |||||||||| | |||||  || || ||||||||||||||||||||| ||| |||||    
T  45012877 tttgattaattctattgaaaatttatttttcgagtatcttgattatgaatgaatcttttacaacaaaaa 45012809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 22667717 - 22667683
Alignment:
Q  13 taggggcacaaaaattattatttttatgtagtagt 47  Q
    ||||||||||||||||||||||||||| |||||||    
T  22667717 taggggcacaaaaattattatttttatttagtagt 22667683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 23897991 - 23897902
Alignment:
Q  64 atatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaa 154  Q
    ||||||| |||| ||| ||| ||||||||||| |||| |||| || |||||| | || ||||||||| ||||||| |||||||| ||||||    
T  23897991 atatattcctttttaatttgctttgattaattctatttaaaa-atatttttagataactttgattataaatgaatattttgcaacaaaaaa 23897902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 29062432 - 29062354
Alignment:
Q  88 gattaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaa 166  Q
    ||||||||  ||| ||||||| || ||| |||| ||| ||||| ||| |||||||||||| |||||||||| |||||||    
T  29062432 gattaattcaatttaaaatatattgttagagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaa 29062354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 42783947 - 42783996
Alignment:
Q  85 tttgattaattatattgaaaatatgtttttaaagaattttgattatgaat 134  Q
    ||||||||||| |||| |||||||||||||||| ||| || |||||||||    
T  42783947 tttgattaattctattaaaaatatgtttttaaaaaatcttaattatgaat 42783996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 40651277 - 40651348
Alignment:
Q  110 tttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataatta 182  Q
    |||||| ||||| ||||||||||||||||| ||| ||| |||| ||| | |||||||||||||  ||||||||    
T  40651277 tttttagagaatgttgattatgaatgaatc-tttacaacaaaatatataagaagaaagacatttgaataatta 40651348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 9702 - 9915
Alignment:
Q  23 aaaattattatttttatgtagtagtagttagtactacatagatatatttctttctaaattgttttgattaattatattgaaaatatgtttttaaagaatt 122  Q
    ||||||||||||||||| ||||   ||||||||||| |||||||||| ||||| ||| | | |||||||||||||||||| ||||| |||||| | || |    
T  9702 aaaattattatttttatttagt---agttagtactatatagatatatatctttttaattcggtttgattaattatattgagaatatatttttagaaaact 9798  T
Q  123 ttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagac--attcaaataatt-aaaaggacataatttcattaattcgtccagggcattaa 219  Q
    |||||||| ||||||  |||| ||| |||||||| |  |||||| ||  |||  ||||||| |||||| || ||||| |||  |||| |||||| || ||    
T  9799 ttgattataaatgaa-gttttacaacaaaaaatataaaaagaaaaactaattggaataattaaaaagggcacaattttatt-tttcgcccagggtatcaa 9896  T
Q  220 aaatcttaggaccggccct 238  Q
    ||||||||| |||||||||    
T  9897 aaatcttagaaccggccct 9915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 1711 - 1816
Alignment:
Q  91 taattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
    ||||| |||||||||||| |||||| |||| ||||||||| ||| ||||||||||||||||||||  | ||||||| | ||| |||||||||||| ||||    
T  1711 taattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagaca 1810  T
Q  191 taattt 196  Q
     |||||    
T  1811 caattt 1816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 9774 - 9879
Alignment:
Q  91 taattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggaca 190  Q
    ||||| |||||||||||| |||||| |||| ||||||||| ||| ||||||||||||||||||||  | ||||||| | ||| |||||||||||| ||||    
T  9774 taattttattgaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaaagaca 9873  T
Q  191 taattt 196  Q
     |||||    
T  9874 caattt 9879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 46942 - 47004
Alignment:
Q  174 aaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggcc 236  Q
    ||||||||||||||||| ||||| |||  ||||||| ||| || ||||| |||||||||||||    
T  46942 aaataattaaaaggacacaattttattgtttcgtcctggggatgaaaaaacttaggaccggcc 47004  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Original strand, 47551 - 47632
Alignment:
Q  89 attaattatattgaaaatatgtttttaaagaattttgattatgaatgaatcttttgcaataaaaaatacatgaagaaagaca 170  Q
    ||||||| |||||||||||| ||| ||   || ||||| ||||||||||| | |||||| || |||| ||||||||||||||    
T  47551 attaattttattgaaaatatatttgtagcaaactttgaatatgaatgaatttcttgcaacaacaaatgcatgaagaaagaca 47632  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 4457 - 4522
Alignment:
Q  174 aaataattaaaaggacataatttcattaattcgtccagggcattaaaaatcttaggaccggccctg 239  Q
    ||||||||||||||||| ||||| |||  |||||  |||| || ||||| ||||||||||||||||    
T  4457 aaataattaaaaggacacaattttattgtttcgttaagggaatcaaaaaacttaggaccggccctg 4522  T

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