View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_31 (Length: 384)
Name: NF20058_low_31
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_31 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 35067141 - 35067289
Alignment:
| Q |
25 |
gtcactaaatcaacattataggaagaaagggtgatgccaacaacaacaataacagctcttagaggcaaagattgcaaaaattccaaatcgttattttttg |
124 |
Q |
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| T |
35067141 |
gtcactaaatcaacattataggaagaaagggtgatgccaacaacaacaataacagctcttagaggcagagattgcaaaaattccaaatcgttactttttg |
35067240 |
T |
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| Q |
125 |
attctctccttactgaagatgactttctgaacccaatgaaagtttgtat |
173 |
Q |
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| T |
35067241 |
attctctccttactgaagatgactttctgaacccaatgaaggtttgtat |
35067289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 271 - 373
Target Start/End: Original strand, 35067380 - 35067496
Alignment:
| Q |
271 |
ggagcaagtggataacatctttgcttagtatctcaagcag--------------acttaaactttgtggtgataatgggcatgaagaaaaatttcaagtt |
356 |
Q |
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| T |
35067380 |
ggagcaagtggataacatctttgcttagtatctcaagcagtatggatatcagggacttaaactctgtggtgataatgggcatgaagaaaaattccaactt |
35067479 |
T |
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| Q |
357 |
tacttccttaatgatga |
373 |
Q |
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| T |
35067480 |
tacttccttaatgatga |
35067496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 11406239 - 11406302
Alignment:
| Q |
310 |
gacttaaactttgtggtgataatgggcatgaagaaaaatttcaagtttacttccttaatgatga |
373 |
Q |
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| T |
11406239 |
gacttaaactttgtggtgataatgggaatgaaaaaaaaattcaagtgtacttccttaatgatga |
11406302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 11406042 - 11406095
Alignment:
| Q |
120 |
ttttgattctctccttactgaagatgactttctgaacccaatgaaagtttgtat |
173 |
Q |
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| T |
11406042 |
ttttgattctctccttgctgaagatgactttctgaacccaatgaaggtttgtat |
11406095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 11406188 - 11406225
Alignment:
| Q |
273 |
agcaagtggataacatctttgcttagtatctcaagcag |
310 |
Q |
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| T |
11406188 |
agcaagtggataacatctttgctcagtatctcaagcag |
11406225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 114678 - 114615
Alignment:
| Q |
310 |
gacttaaactttgtggtgataatgggcatgaagaaaaatttcaagtttacttccttaatgatga |
373 |
Q |
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| T |
114678 |
gactaaaactttgtgctgataatggccacgaagaaaaatttccagtttacttcctcaatgatga |
114615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 114873 - 114824
Alignment:
| Q |
120 |
ttttgattctctccttactgaagatgactttctgaacccaatgaaagttt |
169 |
Q |
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| T |
114873 |
ttttgattctctacttactgaagatgactttcagaatccaatgaaggttt |
114824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 23568593 - 23568535
Alignment:
| Q |
315 |
aaactttgtggtgataatgggcatgaagaaaaatttcaagtttacttccttaatgatga |
373 |
Q |
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| T |
23568593 |
aaactttgtgctgataatggctacgaaggaaaatttcaagtttacttcctcaatgatga |
23568535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 20213020 - 20212975
Alignment:
| Q |
124 |
gattctctccttactgaagatgactttctgaacccaatgaaagttt |
169 |
Q |
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| T |
20213020 |
gattctctacttactgaagatgactttctcagcccaatgaaggttt |
20212975 |
T |
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