View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_35 (Length: 365)
Name: NF20058_low_35
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 96 - 352
Target Start/End: Complemental strand, 28718270 - 28718013
Alignment:
| Q |
96 |
aaaacctctctagacacacggttcggaaaatgctaaccaacataaatgtcaacaaattagtatattgcacattaccattttaatcatacgtactacatta |
195 |
Q |
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| T |
28718270 |
aaaacctctctagacacacggttcggaaaatgctaaccaacataaatgtcaacaaattagtatattgcacattaccattttaatcatatgtactacatta |
28718171 |
T |
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| Q |
196 |
aatttatgtat-aagacataaataagcaactcactatgtcacatcttgtggtaacttctaaaactactaaattttgccaattcaatatactttgaagtat |
294 |
Q |
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| T |
28718170 |
aaattatgtattaagacgtaaataagcaactcactatgtcacatcttgtggtaacttctaaaactactaaattttgccaattcaatatactttgaaatat |
28718071 |
T |
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| Q |
295 |
gttttgtgcataatagccacattagatcaaagttattttacaatatcaatatttatta |
352 |
Q |
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| T |
28718070 |
gttttgtgcataacaaccacattagatcaaagttattttacaatatcaatatttatta |
28718013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 28718848 - 28718752
Alignment:
| Q |
1 |
tgtgatgggttggagtgggagtaatgttacgtttgattgattgggtatctgacaatatagagatttgaaatataaattagttaggtcttgttgggaa |
97 |
Q |
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| T |
28718848 |
tgtgatgggttggagtgggagtagtgttatgtttgattgattgagtatctgacaatatagagatttgaaataaaaattagttaggtcttgttgggaa |
28718752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 13056392 - 13056319
Alignment:
| Q |
1 |
tgtgatgggttggagtgggagtaatgttacgttt--gattgattgggtatctgacaatatagagatttgaaata |
72 |
Q |
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| T |
13056392 |
tgtgatgggttagagtggtagtagtgttatgtttttgattgattggatatctgacgatccagagatttgaaata |
13056319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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