View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_38 (Length: 348)
Name: NF20058_low_38
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 31621333 - 31621652
Alignment:
| Q |
18 |
caaatacaatccagccttctaaaaactgcattgcaaaggaaaacatatcagtcagcaataattgaataggaaattttgtaagaaaagcaaagaacaacca |
117 |
Q |
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| T |
31621333 |
caaatacaatccagccttctaaaaactgcattgcaaaggaaaacatatcagtcagcaataattgaataggaaattttgtaagaaaagcaaagaacaacca |
31621432 |
T |
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| Q |
118 |
tggcatcaactttgtagatgaactacacaaaaaagttttccagacataaacaacaacaatgtcacgaaaaattcatgcaaacaaaacacacaattacatt |
217 |
Q |
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| T |
31621433 |
tggcatcaactttgtagatgaactacacaaaaaagttttccagacataaacaacaacaatgtcacgaaaaattcatgcaaacaaaacacacaattacatt |
31621532 |
T |
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| Q |
218 |
ccggttgtcatgtaaaaagatgcatattaatttgagctaactaatcaatgcatgatttacagattcagggtgattaaataaatactctaaatattgaaga |
317 |
Q |
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| T |
31621533 |
ccggttgtcatgtaaaaagatgcatattaatttgagctaactaatcaatgcatgatttacagattcagggtgattaaataaatactctaaatattgaaga |
31621632 |
T |
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| Q |
318 |
gttagatcattgaatttcat |
337 |
Q |
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| T |
31621633 |
gttggatcattgaatttcat |
31621652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 31625736 - 31625905
Alignment:
| Q |
18 |
caaatacaatccagccttctaaaaactgcattgcaaaggaaaacatatcagtcagcaataatt-gaataggaaattttgtaagaaaagcaaagaacaacc |
116 |
Q |
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| T |
31625736 |
caaatataacccagccctccaaaaactgtattgcaaggggaaacatatcagtaagcaaatattcgaataggaagtttggtgagaaaagcaaagaacaacc |
31625835 |
T |
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| Q |
117 |
atggcatcaactttgtagatgaactacacaaaaaagttttccagacataaacaacaacaatgtcacgaaaa |
187 |
Q |
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| T |
31625836 |
atggcatcaattgtatagatgaactacatcaaaaagttttccatatataaacaataa-aatgtcaagaaaa |
31625905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 247 - 334
Target Start/End: Original strand, 31625985 - 31626072
Alignment:
| Q |
247 |
atttgagctaactaatcaatgcatgatttacagattcagggtgattaaataaatactctaaatattgaagagttagatcattgaattt |
334 |
Q |
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| T |
31625985 |
atttgagcttagcaatcaatacatgatttacagattcggggtgattaagcaaatactctaaatattgaagagttagatcattaaattt |
31626072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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