View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_39 (Length: 347)
Name: NF20058_low_39
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 43714539 - 43714210
Alignment:
| Q |
1 |
ctaggaaaaagtaccaaatttgacatattataaagtctagacaatctttgacttacaagtcaattttttgaggctgagttaggccctgaaacttcataat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714539 |
ctaggaaaaagtaccaaatttgacatattataaagtctagacaatctttgacttacaagtcaattttttgaggctgagttaggccctgaaacttcataat |
43714440 |
T |
|
| Q |
101 |
tagtttcaaagtagttaaacttctgcggttcattataaataagaaacaaagtatgattcctgcccagaacttttgcttaaagtgatgttattgttcatcc |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714439 |
tagtttcaaagtagttaaacttctgcggtttattataaataagaaacaaagtatgattcctgcccagaacttttgcttaaagtgatgttattgttcatcc |
43714340 |
T |
|
| Q |
201 |
agtagaagtattcatttgattttgacaagaaaccacaattcatttgaattatagactagttcaataaacctccataaagtgcttaaccaatccagtaaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714339 |
agtagaagtattcatttgattttgacaagaaaccacaattcatttgaattatagactagttcaataaacctccataaagtgcttaaccaatccagtaaac |
43714240 |
T |
|
| Q |
301 |
catccagctacacaatttgctggttgaacc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
43714239 |
catccagctacacaatttgctggttgaacc |
43714210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 52893186 - 52893531
Alignment:
| Q |
1 |
ctaggaaaaagtaccaaatttgacatattataaagtctagacaatctttgacttacaagtcaattttttgaggctgagttaggccctgaaacttcataat |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| | || |||| ||||||||||| ||||||||| ||||||||||||||||| |||| |
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| T |
52893186 |
ctaggaaaaagtaccaaatttgacatagtataaagtctagacaatttgtgccttataagtcaattttgtgaggctgaattaggccctgaaacttcgtaat |
52893285 |
T |
|
| Q |
101 |
tagtttcaaagtagttaaacttctgcggttcattataaataagaaacaaagtatgatt-cctgcccagaacttttgcttaaagtgatgttattgttcatc |
199 |
Q |
| |
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|||||||||||||| || |||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
52893286 |
tagtttcaaagtag-caagtttctgcaattcagtataaataagaaacaaagtatgattccctgcccagaacttttgcttaaagtgatgttattgttcacc |
52893384 |
T |
|
| Q |
200 |
cagtagaagtatt---catt------------tga-ttttgacaagaaaccacaattcatttgaattatagactagttcaataaacctccataaagtgct |
283 |
Q |
| |
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||||||||||||| |||| ||| |||||||||||||||| | || |||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
52893385 |
cagtagaagtattcgccattttgttaacttaatgatttttgacaagaaaccatagtttatttgaattatagactagttcaatgaacctccataaggtgct |
52893484 |
T |
|
| Q |
284 |
taaccaatccagtaaaccatccagctacacaatttgctggttgaacc |
330 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
52893485 |
taaccgatccagtaaaccatccagctacacaattttgtggttgaacc |
52893531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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