View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_4 (Length: 738)
Name: NF20058_low_4
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 298 - 729
Target Start/End: Original strand, 44093233 - 44093669
Alignment:
| Q |
298 |
tcagtgaataaacgtaacaactacatacatgattaaatgaagaacaaaggattatacctacttcctcaagaacccagatgggtcaaacaaactctggcac |
397 |
Q |
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| T |
44093233 |
tcagtgaataaacgtaacaactacatacatgattaaatgaagaacaaaggattatacctacttcctcaagaacccagatgcgtcaaacaaactctggcac |
44093332 |
T |
|
| Q |
398 |
atcacaattttctggctgccagcggtatccttcaaatgtgaaatctgctcgttttgtccgtctacatggccacattggggataaccattgtttacaacca |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44093333 |
atcacaattttctggctgccagcggtatccttcaaatgtgaaatctgctcgttttgtccgtctacatggccacattggggataaccattgtttacagcca |
44093432 |
T |
|
| Q |
498 |
aacccagaatacatggtctctttttgtccgcagtagttaatctaccattgtccattggcataattac-----aaactgcagaagagaaatgttgatcaga |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44093433 |
aacccagaatacatggtctctttttgtccgcagtagttaatctaccattgtccattggcataattacaaattaaactgcagaagagaaatgttgatcaga |
44093532 |
T |
|
| Q |
593 |
caccaaatttgtaaaaagacttcagaatcaggagatacatacacccaggataaaagcaacatataaaatggcaaccaacttggtgctnnnnnnntcatcc |
692 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44093533 |
caccaaatttgtaaaaagacttcagaatcaggagatacatacacccaggataaaagcaacatataaaatggcaaccaacttggtgctaaaaaaatcatcc |
44093632 |
T |
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| Q |
693 |
catgtaatctaacacataattttcattctagaataat |
729 |
Q |
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| T |
44093633 |
catgtaatctaacacataattttcattctagaataat |
44093669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 44093152 - 44093203
Alignment:
| Q |
17 |
agattgaaactgttgtctacccaatgaatgcaattgttttgtcatgcatact |
68 |
Q |
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| T |
44093152 |
agattgaaactgttgtctacccaacgaatgcaattgttttgtcatgcatact |
44093203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 343 - 508
Target Start/End: Original strand, 39279042 - 39279203
Alignment:
| Q |
343 |
aaaggattatacctacttcctcaagaacccagatgggtcaaacaaactctggcacatcacaattttctggctgccagcggtatccttcaaatgtgaaatc |
442 |
Q |
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|||| ||||||||||||| ||||||||| |||| |||||||| ||| ||| ||||||||| | |||||||||||||||||| ||||||| |||| |
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| T |
39279042 |
aaagaattatacctactttctcaagaacttagatcggtcaaac----tcttgcatatcacaattctttggctgccagcggtatccctcaaatgaaaaatt |
39279137 |
T |
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| Q |
443 |
tgctcgttttgtccgtctacatggccacattggggataaccattgtttacaaccaaacccagaata |
508 |
Q |
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|| ||||| |||| |||||||| |||||||| |||||||| || ||||| || || |||||||| |
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| T |
39279138 |
tggtcgttgtgtcattctacatgaccacattgatgataaccactgcttacagccgaaaccagaata |
39279203 |
T |
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