View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_45 (Length: 319)
Name: NF20058_low_45
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 82 - 306
Target Start/End: Complemental strand, 30965534 - 30965310
Alignment:
| Q |
82 |
attgcctctctaatttttctttcatcccttttctccttcatcctcaagcgctgctcacggccctctccaaagtaaaattgatacattctatgaacattat |
181 |
Q |
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| T |
30965534 |
attgtctctctaatttttctttcatcccttttctccttcatcctcaagcgctgctcacggccctctccaaagtaaaattgatacattctatgaacattat |
30965435 |
T |
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| Q |
182 |
aaaatgtttgaattatctccacaatgatatggataataatgatgacaaaaaccacataagaaccatatttaatcttttctattagatagaccactgaatc |
281 |
Q |
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||||||||||||||||| |||||||| | | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
30965434 |
aaaatgtttgaattatccccacaatggttttgataataatgatgacaaaaactacataaaaaccatatttaatcttttctattagatagagcactgaatc |
30965335 |
T |
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| Q |
282 |
atgaccagtagtaagtccaaggttc |
306 |
Q |
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||||||||||||||||||||||||| |
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| T |
30965334 |
atgaccagtagtaagtccaaggttc |
30965310 |
T |
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