View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_48 (Length: 311)
Name: NF20058_low_48
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 22489563 - 22489277
Alignment:
| Q |
17 |
agaaaaagcaggacaaaaggaaagacaagcctttgaggaaagatcttgttgtgaaacagttatttgtggcaacaaactaggttgagaatgttgatattaa |
116 |
Q |
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| T |
22489563 |
agaaaaagcaggacaaaaggaaagacaagcctttgaggaaagatcttgttgtgaaacagttatttgtggcaacaaactaggttgagaatgttgatattaa |
22489464 |
T |
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| Q |
117 |
tgaaactaaaaaagaagacataaatgtggaaacaattggctgactgacaaagaaactgaagcagaaaatgcgtctgaacatcctgttcaagttcctgatg |
216 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22489463 |
ggaaactaaaaaagaagacaaaaatgtggaaacaattggctgactgacaaagaaactgaagcagaaaatgcgtctgaacatcctgttcaagttcctgatg |
22489364 |
T |
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| Q |
217 |
gtgctctcgatgtgaatgtacagtttgaggctgatgttgaaaaacagaatgttgatgagcacaatattgattacaataatgatgatg |
303 |
Q |
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||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22489363 |
gtgctctggatgtgaatgtacagtttgaggctgatgtcgaaaaacagaatgttgatgagcacaatattgatgacaataatgatgatg |
22489277 |
T |
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