View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_49 (Length: 310)
Name: NF20058_low_49
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 43714859 - 43714648
Alignment:
| Q |
13 |
ataattctgaagactgaaagaacatttgcatgtgtatattaactaaatataggatatggagtttaccaagttgcatgcaataaaggttgcaatttgtatg |
112 |
Q |
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| T |
43714859 |
ataattctcaagactgaaagaacatttgcatgtgtatattaaccaaatataggatatggagtttaccaatttgcatgcaataaaggttgcaatttgtatg |
43714760 |
T |
|
| Q |
113 |
caggaaatctagtagtagttcacaatttgctgagttgtttattgctagaaatttaatgtttgatatcatttacgtgtttagaataattgtaaaatatttt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43714759 |
caggaaatctagtagtagttcacaatttgctgagttgtttattgctagaaatttaatgtttgatatcatttacgtgtttagaataattgtaaaatatttt |
43714660 |
T |
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| Q |
213 |
aatctgtgtagg |
224 |
Q |
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|||||||||||| |
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| T |
43714659 |
aatctgtgtagg |
43714648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 52892868 - 52893076
Alignment:
| Q |
13 |
ataattctgaagactgaaagaacatttgcatgtgtatattaactaaatataggatatggagtttaccaagttgcatgc-----aataaaggttgcaattt |
107 |
Q |
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| T |
52892868 |
ataattctgaagactcaaagaacatttgcatccatatattaactaaatataggatatttagtttaccaatttgcatgcaaaaaaaaaaaggttgcaatct |
52892967 |
T |
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| Q |
108 |
gtatgcaggaaatctagtagtagttcacaatttgctgagttgtttattgctagaaatttaatgtttgatatcatttacgtgtttagaataattgtaaaat |
207 |
Q |
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||| ||||||||| ||||| ||||||||||| |||| ||||||||||| | |||||||||||||| |||||||||||||| ||||||||| |
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| T |
52892968 |
gtacacaggaaatc---tagtaattcacaatttggcaagttcgttattgctaga-----agtgtttgatatcattcacgtgtttagaatatttgtaaaat |
52893059 |
T |
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| Q |
208 |
attttaatctgtgtagg |
224 |
Q |
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|||||||||||| |||| |
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| T |
52893060 |
attttaatctgtatagg |
52893076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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