View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_52 (Length: 291)
Name: NF20058_low_52
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_52 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 27151751 - 27151472
Alignment:
| Q |
11 |
agcagagatggggaaatgcatcaagtaaaacttttataaaatggtgcattctgtggcnnnnnnnnnctagagaatctgtttagatttttaaatgcatttc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
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| T |
27151751 |
agcagagatggggaaatgcatcaagtaaaacttttataaaatggtgcattcggtggcatatactttctagagaatctgtatagatttttaaatgcatttc |
27151652 |
T |
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| Q |
111 |
ttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggtttataaattctgtgtg |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27151651 |
ttctggggctcaaatgatgaaggggagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggtttataaattctgtgtg |
27151552 |
T |
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| Q |
211 |
tctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatctccatatttaaatcat |
291 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27151551 |
tctaagct-gcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatacaaaaatctccatatttaaatcat |
27151472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 11 - 291
Target Start/End: Complemental strand, 21432938 - 21432662
Alignment:
| Q |
11 |
agcagagatggggaaatgcatcaagtaaaacttttataaaatggtgcattctgtggcnnnnnnnnnctagagaatctgtttagatttttaaatgcatttc |
110 |
Q |
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|||| |||||||||||||||| ||||||||||| |||||||||||||||| |||| ||||||||||||| || |||||||||||||||| |
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| T |
21432938 |
agcacagatggggaaatgcattaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttc |
21432839 |
T |
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| Q |
111 |
ttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggttta-taaattctgtgt |
209 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||| ||||||| |||| |
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| T |
21432838 |
ttctggg-ctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtccagaa---ccaagcaaagctttctacggtttaataaattccgtgt |
21432743 |
T |
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| Q |
210 |
gtctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatctccatatttaaatcat |
291 |
Q |
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| T |
21432742 |
gtgtaagctt-cgcactctagaaatttcctcctcatgaagtcttagtccctgagcatacaaaaatctccatatttaaatcat |
21432662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 77 - 291
Target Start/End: Original strand, 27099557 - 27099767
Alignment:
| Q |
77 |
ctagagaatctgtttagatttttaaatgcatttcttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataacca |
176 |
Q |
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||||||||||||| ||| |||| || |||||||||| |||| ||||| ||||||||||||||||||||| | |||||||||||| | |||||| ||| |
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| T |
27099557 |
ctagagaatctgtataggttttcaattgcatttcttttgggt-tcaaaggatgaagggaagtggtatttatctgtgtgtgatctaagtccagaa---cca |
27099652 |
T |
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| Q |
177 |
agcaaagctttctatggttta-taaattctgtgtgtctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatc |
275 |
Q |
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|||||||||||||| |||||| ||||||| |||||| ||||||| | ||||||| ||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
27099653 |
agcaaagctttctacggtttaataaattccgtgtgtgtaagctg-cgcactctagaaatttcctcatcatgaagtcttagtccctgaacatatgaaaatc |
27099751 |
T |
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| Q |
276 |
tccatatttaaatcat |
291 |
Q |
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|||||||||||||||| |
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| T |
27099752 |
tccatatttaaatcat |
27099767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 26988804 - 26988599
Alignment:
| Q |
77 |
ctagagaatctgtttagatttttaaatgcatttcttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataacca |
176 |
Q |
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||||||||||||| | | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | | || ||||| |
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| T |
26988804 |
ctagagaatctgtatgggtttttaaatgcatttcttctggg-ctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtctag---aacca |
26988709 |
T |
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| Q |
177 |
agcaaagctttctatggttt-ataaattctgtgtgtctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatc |
275 |
Q |
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|||||||||||||| | ||| ||||||||| |||| ||| || ||||||| ||||||||| ||| | |||| ||||||||||||||| ||||||| |
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| T |
26988708 |
agcaaagctttctacgatttaataaattcttcacgtctctgct-gcgcactctagaaatttccttatcatcaagttttagtccctgaacatacaaaaatt |
26988610 |
T |
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| Q |
276 |
tccatatttaa |
286 |
Q |
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||||||||||| |
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| T |
26988609 |
tccatatttaa |
26988599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 27076455 - 27076659
Alignment:
| Q |
77 |
ctagagaatctgtttagatttttaaatgcatttcttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataacca |
176 |
Q |
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||||||||||||| | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| | || ||||| |
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| T |
27076455 |
ctagagaatctgtatgagtttttaaatgcatttcttctggg-ctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaggtctag---aacca |
27076550 |
T |
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| Q |
177 |
agcaaagctttctatggttt-ataaattctgtgtgtctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatc |
275 |
Q |
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| |||||||||||| | ||| ||||||||| ||||| || || ||||||| ||||||||| ||| | |||| |||||||||||| | |||||||| |
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| T |
27076551 |
aacaaagctttctacgatttaataaattcttcacgtctatgc-cgcgcactctagaaatttccttatcatcaagttttagtccctgaaaacacaaaaatc |
27076649 |
T |
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| Q |
276 |
tccatattta |
285 |
Q |
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|||||||||| |
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| T |
27076650 |
tccatattta |
27076659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 27028122 - 27027917
Alignment:
| Q |
77 |
ctagagaatctgtttagatttttaaatgcatttcttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataacca |
176 |
Q |
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||||||||||||| | | ||||||||||||||||||||| | |||||| | | ||| ||||||||||||||||||||||||||||| |||| ||||| |
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| T |
27028122 |
ctagagaatctgtatgggtttttaaatgcatttcttctgag-ctcaaacggtaaagaaaagtggtatttagcagtgtgtgatctaggtccag---aacca |
27028027 |
T |
|
| Q |
177 |
agcaaagctttctatggttt-ataaattctgtgtgtctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatc |
275 |
Q |
| |
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| |||||||||||| | ||| ||||||||| ||||| | | || ||||||| ||||||||| ||| | |||| |||||||||||| || |||||||| |
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| T |
27028026 |
aacaaagctttctacgatttaataaattcttcacgtctatg-tcgcgcactctagaaatttccttatcatcaagttttagtccctgaaaatacaaaaatc |
27027928 |
T |
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| Q |
276 |
tccatatttaa |
286 |
Q |
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||||||||||| |
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| T |
27027927 |
tccatatttaa |
27027917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 77 - 286
Target Start/End: Complemental strand, 34690880 - 34690675
Alignment:
| Q |
77 |
ctagagaatctgtttagatttttaaatgcatttcttctggggctcaaatgatgaagggaagtggtatttagcagtgtgtgatctaggcccagaataacca |
176 |
Q |
| |
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||||||||||||| | | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| | | || ||||| |
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| T |
34690880 |
ctagagaatctgtatgggtttttaaatgcatttcttctggg-ctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaagtc---aagaacca |
34690785 |
T |
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| Q |
177 |
agcaaagctttctatggttt-ataaattctgtgtgtctaagctggcacactctacaaatttcctcatcgtgaagtcttagtccctgaacatgcaaaaatc |
275 |
Q |
| |
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|||||||||||||| | ||| ||||||||| |||| ||| || ||||||| ||||||||| ||| | |||| ||||||||||||||| ||||||| |
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| T |
34690784 |
agcaaagctttctacgatttaataaattcttcacgtctctgct-gcgcactctagaaatttccttatcatcaagttttagtccctgaacatacaaaaatt |
34690686 |
T |
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| Q |
276 |
tccatatttaa |
286 |
Q |
| |
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||||||||||| |
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| T |
34690685 |
tccatatttaa |
34690675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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