View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20058_low_6 (Length: 668)

Name: NF20058_low_6
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20058_low_6
NF20058_low_6
[»] chr4 (2 HSPs)
chr4 (85-601)||(52701460-52701964)
chr4 (25-73)||(10341214-10341262)
[»] scaffold0756 (1 HSPs)
scaffold0756 (23-427)||(835-1231)
[»] chr1 (2 HSPs)
chr1 (95-598)||(20101121-20101647)
chr1 (38-72)||(20101081-20101115)
[»] chr5 (3 HSPs)
chr5 (24-370)||(38628578-38628924)
chr5 (24-232)||(11214374-11214574)
chr5 (449-601)||(38628377-38628535)
[»] chr2 (5 HSPs)
chr2 (87-405)||(18071307-18071625)
chr2 (446-601)||(18071674-18071828)
chr2 (245-340)||(28216760-28216855)
chr2 (24-73)||(12394244-12394293)
chr2 (95-126)||(18071315-18071346)
[»] scaffold0001 (2 HSPs)
scaffold0001 (31-312)||(414595-414866)
scaffold0001 (452-493)||(406487-406528)
[»] chr8 (3 HSPs)
chr8 (96-270)||(16601750-16601924)
chr8 (25-182)||(1296243-1296390)
chr8 (572-601)||(34240602-34240631)
[»] chr3 (7 HSPs)
chr3 (35-503)||(14893506-14893950)
chr3 (219-343)||(43365677-43365803)
chr3 (24-162)||(49715971-49716110)
chr3 (353-601)||(14893405-14893659)
chr3 (320-415)||(49716257-49716352)
chr3 (464-503)||(43363572-43363611)
chr3 (558-601)||(49716427-49716470)
[»] chr7 (2 HSPs)
chr7 (94-144)||(5062696-5062746)
chr7 (572-601)||(28633874-28633903)


Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 85 - 601
Target Start/End: Complemental strand, 52701964 - 52701460
Alignment:
Q  85 attacgttctgatactccatcgatacgtatcgacggagtatccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcgg 184  Q
    |||||||  |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  52701964 attacgtcttgatactccatcgatacgtatcgacggagtatccaatttatttatttatttttaaaacacaaaataattcagatacttcgttgacacgcgg 52701865  T
Q  185 tgatacgctgccgatacgcctcatatgccacagatacaactagttcatttagttttccaataaaaaatttctcctccttaattacccctatctgctttaa 284  Q
               ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| | ||| ||||||    
T  52701864 -----------cgatacgtctcatatgccagagatacaactagttcatttagtttttcaataaaaaaattctcctctttaattacccttctctcctttaa 52701776  T
Q  285 ttacctcttctctttcgtttaatagatagcacacttttctatgattccattcctcattggagatacagttttcttttctttaattgatagttgatacatt 384  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  52701775 ttacctcttctctttcgtttaatagatagtacacttttctatgattccattcctcattgcagatacagttttcttttatttaattgatagttgatacatt 52701676  T
Q  385 taacaagatgtccattcaattatacattaacctactattgcagtttccannnnnnnaagaatgtagtttccattttatatttactataaatgtttaagat 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  52701675 taacaagatgtccattcaattatacattaacctactattgcagtttccatttttttaagaatgtagtttccattttatatttactataaatgtttaagat 52701576  T
Q  485 atgtgttatcttttcttctcgtagtaaatatcttttctataaatgcacattcaatttatgcaaacnnnnnnnntgttcaaagcggtctttttattttaat 584  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||| |||||||||||||||    
T  52701575 atgtgttatcttttcttctggtagtaaatatcttttctataaatgcacattcaatttatgcaaac-aaaaaaatgttcaaagcgatctttttattttaat 52701477  T
Q  585 tttcttaaattacaata 601  Q
    |||||||||||||||||    
T  52701476 tttcttaaattacaata 52701460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 10341262 - 10341214
Alignment:
Q  25 tatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgc 73  Q
    ||||| ||||| |||||||||||||||||| ||||||||| ||||||||    
T  10341262 tatgaagcacggatacttcaaaatagctactgtatcgtattcgatacgc 10341214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0756 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0756
Description:

Target: scaffold0756; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 23 - 427
Target Start/End: Complemental strand, 1231 - 835
Alignment:
Q  23 gctatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgctctgatacgccattacgttct-gatactccatcgatacgtatcgacgga 121  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||  ||||| |  |||||||||||||||||||||||||||    
T  1231 gctatgaagcacggatacttcaaaatagctaccgtatcgtatccgatacgccccgatacaccgatacgtccccgatactccatcgatacgtatcgacgga 1132  T
Q  122 gtatccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtgatacgctgccgatacgcctcatatgccacagatac 221  Q
    ||||||||||||| |||||||||| |||| | |||||||||| |||| || ||||||||||||           |||||||||||| ||||||| |||||    
T  1131 gtatccgatttatttatttattttaaaaaaataaaataattccgatactttgtcgacacgcgg-----------cgatacgcctcagatgccactgatac 1043  T
Q  222 aactagttcatttagttttccaataaaaaatttctcctccttaattacccctatctgctttaattacctcttctctttcgtttaatagatagcaca--ct 319  Q
    || ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||   |    
T  1042 aagtagttcatttagttttccaataaaaaatttctcctccataattacccctctctcctttaattacctcttctctttcctttaatagatagtacatttt 943  T
Q  320 tttctatgattccattcctcattggagatacagttttcttttctttaattgatagttgatacatttaacaagatgtccattcaattatacattaacctac 419  Q
    ||| |||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  942 tttttatgattccattcctcattgcagataagtttttcttttctttaattgatagttgatacatttaacaagatgtccattcaattgtacattaacctac 843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 95 - 598
Target Start/End: Original strand, 20101121 - 20101647
Alignment:
Q  95 gatactccatcgatacgtatcgacggagtatccgatttatgtatttatttttaaaacac-aaaataattcagatatttcgtcgacacgcggtgatacgct 193  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||||| |||| |  |||||||||| |||| ||||||||||||||| ||||||||    
T  20101121 gatactccatcgatacgtttcgacgaagtatccgatttatttatttattttaaaaaaaataaaataattccgatacttcgtcgacacgcggcgatacgct 20101220  T
Q  194 gccgatacgcctcatatgccac---------agatacaactagttcatttagttttccaataaaaaatttctcctccttaattacccctatctgctttaa 284  Q
    |||||||||||||| |||||||         | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||    
T  20101221 gccgatacgcctcagatgccacgccactaatacatacaagtagttcatttagttttccaataaaaaatttctcctccttaattacccct--caactttaa 20101318  T
Q  285 ttacctcttctctttcgtttaatagatagcacactttt-ctatgattccattcctcattggagatacagttttcttttctttaattgatagttgatacat 383  Q
    |||||||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||    
T  20101319 ttacctcttctctttcctttaatagatagtacattttttctatgattccattcctcattgcagataagtttttcttttctttaattgatagttgatacat 20101418  T
Q  384 ttaacaagatgtccattcaattatacattaacctactatt----gcagtttcca-----nnnnnnnaagaatgtagtttccattttatatttactataaa 474  Q
    |||||||||||||||||||||| ||||||||||||| |||    |||| |||||            ||| ||| ||||| ||||||||||||||||||||    
T  20101419 ttaacaagatgtccattcaattgtacattaacctacgattgcaggcagattccattttttttttttaaggatgcagttttcattttatatttactataaa 20101518  T
Q  475 tgtttaagatatgtgttatcttttcttctcgta---------gtaaatatcttttctataaatgcacattcaatttatgcaaacnnnnnnnntgttcaaa 565  Q
    ||||| ||||| ||||||||||||||||| |||         ||| |||| ||||||||||||||||||||||||| || |||         ||||||||    
T  20101519 tgtttgagatacgtgttatcttttcttcttgtagattttacggtatatattttttctataaatgcacattcaatttctgtaaa----aaaaatgttcaaa 20101614  T
Q  566 gcggtctttttattttaattttcttaaattaca 598  Q
    | |||||||||||||||||||||||| ||||||    
T  20101615 gtggtctttttattttaattttcttatattaca 20101647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 20101081 - 20101115
Alignment:
Q  38 tacttcaaaatagctaccgtatcgtatccgatacg 72  Q
    |||||||||||||||||||||||||||||||||||    
T  20101081 tacttcaaaatagctaccgtatcgtatccgatacg 20101115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 24 - 370
Target Start/End: Complemental strand, 38628924 - 38628578
Alignment:
Q  24 ctatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgctctgatacgccattacgttctgatactccatcgatacgtatcgacggagt 123  Q
    |||||| ||||| ||||||||||||||| ||||||||||||||||||||| | ||||||||  |||   | |||||||| |||||| ||||||||||| |    
T  38628924 ctatgaagcacggatacttcaaaatagccaccgtatcgtatccgatacgccccgatacgccgatactccccgatactccgtcgatatgtatcgacggaat 38628825  T
Q  124 atccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtgatacgctgccgatacgcctcatatgccacagatacaa 223  Q
    ||| ||||||| ||||||||||||||| | |||||||||| ||||  |||||||||||||  ||||||||||||||||||||   || |||| |||||||    
T  38628824 atctgatttatttatttatttttaaaaaataaaataattccgatacgtcgtcgacacgcgacgatacgctgccgatacgccttggataccactgatacaa 38628725  T
Q  224 ctagttcatttagttttccaataaaaaatttctcctccttaattacccctatctgctttaattacctcttctctttcgtttaatagat--agcacacttt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||||||| || |||| |||||  |  ||| |||    
T  38628724 ctagttcatttagttttccaataaaaaatttctcctccttaattaccc--atctcctttagttacctcttctctctcctttagtagatacaatacatttt 38628627  T
Q  322 tctatgattccattcctcattggagatacagttttcttttctttaattg 370  Q
    |||||||||||||| |||||||  ||||   ||||||||||||||||||    
T  38628626 tctatgattccattactcattgcggataggtttttcttttctttaattg 38628578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 11214574 - 11214374
Alignment:
Q  24 ctatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgctctgatacgccattacgttctgatactccatcgatacgtatcgacggagt 123  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||       || ||   |||  |||||||||  | || | ||||||||||||    
T  11214574 ctatgaagcacgaatacgtcaaaatagctaccgtatcgtatccgatacgc-------cgaca---cgtcttgatactccggctatgcatatcgacggagt 11214485  T
Q  124 atccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtgatacgctgccgatacgcctc--atatgccacagatac 221  Q
    ||||||||||| |||||||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||| |||||||  ||| ||||| |||||    
T  11214484 atccgatttatttatttattttaaaaatataaaataattccgatacttcgtcgacacgcggtcatacgctgccgacacgcctcagatacgccaccgatac 11214385  T
Q  222 aactagttcat 232  Q
    | |||||||||    
T  11214384 agctagttcat 11214374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 449 - 601
Target Start/End: Complemental strand, 38628535 - 38628377
Alignment:
Q  449 agtttccattttatatttactataaatgtttaagatatgtgttatct---tttcttctcg----ta--gtaaatatcttttctataaatgcacattcaat 539  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |   |||||||| |    ||  |||||||| ||||||||| |||||||||||||    
T  38628535 agtttccattttatatttactataaatgtttaagatctgtgttatttctttttcttctaggttttacggtaaatattttttctatatatgcacattcaat 38628436  T
Q  540 ttatgcaaacnnnnnnnntgttcaaagcggtctttttattttaattttcttaaattacaata 601  Q
    || ||| ||         ||||||||||||||||||||||||||||||||||||||||||||    
T  38628435 ttctgccaa---aagaaatgttcaaagcggtctttttattttaattttcttaaattacaata 38628377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 9e-75; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 9e-75
Query Start/End: Original strand, 87 - 405
Target Start/End: Original strand, 18071307 - 18071625
Alignment:
Q  87 tacgttctgatactccatcgatacgtatcgacggagtatccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtg 186  Q
    ||||| |||||||||| |||||||||||||| ||||||||| |||||| ||||||| ||| ||| | |||||||||| ||||  |||||||||||| | |    
T  18071307 tacgtcctgatactccgtcgatacgtatcgatggagtatccaatttatttatttatctttgaaaaataaaataattctgatacgtcgtcgacacgcagcg 18071406  T
Q  187 atacgctgccgatacgcctcatatgccacagatacaactagttcatttagttttccaataaaaaatttctcctccttaattacccctatctgctttaatt 286  Q
    ||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |||| ||    
T  18071407 atacgctgccgatacgcctcagatgccactcacacaactagttcatttagttttccaataaaaactttctcctccttaattacccctctttgttttagtt 18071506  T
Q  287 acctcttctctttcgtttaatagat--agcacacttttctatgattccattcctcattggagatacagttttcttttctttaattgatagttgatacatt 384  Q
    || |||||||| || ||||||||||  |  | | |||||||||||| |||| ||||||  | ||||  ||||||||||||||||  ||||||||||||||    
T  18071507 acttcttctctctcctttaatagatacaatatatttttctatgatttcattactcattacatatacgtttttcttttctttaat--atagttgatacatt 18071604  T
Q  385 taacaagatgtccattcaatt 405  Q
    |||| || |||||||||||||    
T  18071605 taaccagttgtccattcaatt 18071625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 446 - 601
Target Start/End: Original strand, 18071674 - 18071828
Alignment:
Q  446 tgtagtttccattttatatttactataaatgtttaagatatgtgttatcttttcttctcgt---------agtaaatatcttttctataaatgcacattc 536  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |         || |||||| ||||||||||||||||||||    
T  18071674 tgtagtttccattttatatttactataaatgtttaagatttgtgttattttttcttcttctaggttttacagcaaatattttttctataaatgcacattc 18071773  T
Q  537 aatttatgcaaacnnnnnnnntgttcaaagcggtctttttattttaattttcttaaattacaata 601  Q
    ||||| ||  |          | ||||||||||||||||||||||||||||||||||||||||||    
T  18071774 aatttctgtca----------tattcaaagcggtctttttattttaattttcttaaattacaata 18071828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 28216760 - 28216855
Alignment:
Q  245 taaaaaatttctcctccttaattacccctatctgctttaattacctcttctctttcgtttaatagatag--cacacttttctatgattccattcctca 340  Q
    ||||||||||||||||||||||||||||| ||| ||||  ||||||||||||  || ||||||||||||   ||| ||||||||||||||||| ||||    
T  28216760 taaaaaatttctcctccttaattacccctctctcctttggttacctcttctc--tcctttaatagatagaatacatttttctatgattccattactca 28216855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 12394293 - 12394244
Alignment:
Q  24 ctatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgc 73  Q
    |||||| ||||| ||| ||||||||| |||||||||||||||||||||||    
T  12394293 ctatgaagcacgtatatttcaaaataactaccgtatcgtatccgatacgc 12394244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 126
Target Start/End: Complemental strand, 18071346 - 18071315
Alignment:
Q  95 gatactccatcgatacgtatcgacggagtatc 126  Q
    ||||||||||||||||||||||||||||||||    
T  18071346 gatactccatcgatacgtatcgacggagtatc 18071315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 7e-51; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 31 - 312
Target Start/End: Complemental strand, 414866 - 414595
Alignment:
Q  31 gcacgaatacttcaaaatagctaccgtatcgtatccgatacgctctgatacgccattacgttctgatactccatcgatacgtatcgacggagtatccgat 130  Q
    ||||| ||||||||||||||||||||||| |||||||||| |  | |||||||           |||||||||| ||||||||||  |||||||||||||    
T  414866 gcacgtatacttcaaaatagctaccgtatggtatccgatatgtcccgatacgca----------gatactccattgatacgtatcagcggagtatccgat 414777  T
Q  131 ttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtgatacgctgccgatacgcctcatatgccacagatacaactagttc 230  Q
    |||| || |||||||||||| | |||||||||| ||||  |||||||||||||| |||||||||||||||||||||  |||||||  ||| | |||||||    
T  414776 ttatttaattatttttaaaaaataaaataattccgatacgtcgtcgacacgcggcgatacgctgccgatacgcctcggatgccacttatatagctagttc 414677  T
Q  231 atttagttttccaataaaaaatttctcctccttaattacccctatctgctttaattacctcttctctttcgtttaatagata 312  Q
    |||||||||| ||||||||| |||||  ||| ||||||||||| ||  ||||| ||| ||||||||| || |||||||||||    
T  414676 atttagtttttcaataaaaactttcttttccataattacccctttcccctttagttatctcttctctctcctttaatagata 414595  T

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Target: scaffold0001; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 406528 - 406487
Alignment:
Q  452 ttccattttatatttactataaatgtttaagatatgtgttat 493  Q
    ||||||||||||||||| ||||||||||||||| ||||||||    
T  406528 ttccattttatatttacgataaatgtttaagatttgtgttat 406487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 96 - 270
Target Start/End: Original strand, 16601750 - 16601924
Alignment:
Q  96 atactccatcgatacgtatcgacggagtatccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtgatacgctgc 195  Q
    ||||||| || |||| |||| |||||||||||||||||| ||||||||||||||| | |||||||||| ||||  |||||||||||||| |||||||| |    
T  16601750 atactccgtccatacatatcaacggagtatccgatttatttatttatttttaaaaaataaaataattctgatacgtcgtcgacacgcggcgatacgctac 16601849  T
Q  196 cgatacgcctcatatgccacagatacaactagttcatttagttttccaataaaaaatttctcctccttaattacc 270  Q
    |||||| | ||| ||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  16601850 cgatacacgtcagatgtcactgatacaactagttcatttaattttccaataaaaactttctcctccttaattacc 16601924  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 25 - 182
Target Start/End: Complemental strand, 1296390 - 1296243
Alignment:
Q  25 tatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgctctgatacgccattacgttctgatactccatcgatacgtatcgacggagta 124  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||||||||       || ||   ||| | |||||||| || || |||||||||| ||||    
T  1296390 tatgaagcacaaatacgtcaaaatagctaccgtatcgtatccgatacgc-------cgaca---cgtcccgatactccgtctatgcgtatcgacgaagta 1296301  T
Q  125 tccgatttatgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgc 182  Q
    | | |||||| |||||||||| |||| | |||||||||| |||| |||||||||||||    
T  1296300 ttcaatttatttatttattttaaaaatataaaataattccgatacttcgtcgacacgc 1296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 601
Target Start/End: Complemental strand, 34240631 - 34240602
Alignment:
Q  572 tttttattttaattttcttaaattacaata 601  Q
    ||||||||||||||||||||||||||||||    
T  34240631 tttttattttaattttcttaaattacaata 34240602  T

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Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 35 - 503
Target Start/End: Complemental strand, 14893950 - 14893506
Alignment:
Q  35 gaatacttcaaaatagctaccgtatcgtatccgatacgctct-gatacgccattacgttctgatactccatcgatacgtatcgacggagtatccgattta 133  Q
    ||||||||||||||||||||||||||| |||| ||||| ||| | || ||   |||| || |||||| | | ||||||||| ||  ||||||| ||||||    
T  14893950 gaatacttcaaaatagctaccgtatcgaatcccatacg-tctcggtatgctgatacgctccgatacttcgttgatacgtatagatagagtatctgattta 14893852  T
Q  134 tgtatttatttttaaaacacaaaataattcagatatttcgtcgacacgcggtgatacgctgccgatacgcctcatatgccacagatacaactagttcatt 233  Q
    | ||||||||||||||| | | |||||||| ||||  || ||||||||||| ||||| |||||||||||||||  |||||||      | ||||||        
T  14893851 tttatttatttttaaaaaatagaataattccgatacatcatcgacacgcggcgatacactgccgatacgcctcgaatgccact-----agctagtt---- 14893761  T
Q  234 tagttttccaataaaaaatttctcctccttaattacccctatctgctttaattacctcttctct-ttcgttta-atagatagcacacttttctatgattc 331  Q
          ||||||||||| ||||||||| |||||||||||| ||| ||||| | ||||||||||| |||||| | | | | |  | | |||||||||||||    
T  14893760 ------tccaataaaaactttctcctctttaattacccctctctcctttagtaacctcttctctcttcgttaataaacacaatatatttttctatgattc 14893667  T
Q  332 cattcctcattggagatacagttttcttttctttaattgatagttgatacatttaacaagatgtccattcaattatacattaacctactattgcagtttc 431  Q
    |              ||||  ||||||||||||||||||||||||||||||||||||  | | | ||||||||| |||||||||||   |||||||||||    
T  14893666 c--------------atacgtttttcttttctttaattgatagttgatacatttaactggtttttcattcaattttacattaacctttgattgcagtttc 14893581  T
Q  432 ca---nnnnnnnaagaatgtagtttccattttatatttactataaatgtttaagatatgtgttatcttttcttct 503  Q
    ||          ||| ||  |||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  14893580 catttttttttaaaggatacagtttccattttatatttactataaatgtttaagatctgtgttattttttcttct 14893506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 43365803 - 43365677
Alignment:
Q  219 tacaactagttcatttagttttccaataaaaaatttctcctccttaattacccctatctgctttaattacctcttctctttcgtttaatag--atagcac 316  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||| |||  |||| ||| ||||||||| || ||||||||  ||||  |    
T  43365803 tacaactagttcatttagatttccaataaaaactttctcctccttagttacccctctctcttttagttatctcttctctctcatttaatagatatagtgc 43365704  T
Q  317 acttttctatgattccattcctcattg 343  Q
    | ||||||||||||||||| |||||||    
T  43365703 atttttctatgattccattactcattg 43365677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 49715971 - 49716110
Alignment:
Q  24 ctatgacgcacgaatacttcaaaatagctaccgtatcgtatccgatacgctctgatacgccattacg-ttctgatactccatcgatacgtatcgacggag 122  Q
    |||||| ||||  |||| ||||| ||||||||||||| |||||||||||| | ||||||||  |||| | |  |||||| |||||||||||||||| |||    
T  49715971 ctatgaagcaccgatacatcaaagtagctaccgtatcatatccgatacgccccgatacgccgatacgctcccaatactctatcgatacgtatcgacagag 49716070  T
Q  123 tatccgatttatgtatttatttttaaaacacaaaataatt 162  Q
    |||||||||||| ||||||||||||||| | |||||||||    
T  49716071 tatccgatttatttatttatttttaaaaaataaaataatt 49716110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 353 - 601
Target Start/End: Complemental strand, 14893659 - 14893405
Alignment:
Q  353 ttttcttttctttaattgatagttgatacatttaacaagatgtccattcaattatacattaacctactattgcagtttccannnnnnn---aagaatgta 449  Q
    ||||||||||||||||||||||||||||||||||||  | | | ||||||||| |||||||||||   |||||||||||||          ||| ||  |    
T  14893659 ttttcttttctttaattgatagttgatacatttaactggtttttcattcaattttacattaacctttgattgcagtttccatttttttttaaaggataca 14893560  T
Q  450 gtttccattttatatttactataaatgtttaagatatgtgttatcttttcttctcgtag---------taaatatcttttctataaatgcacattcaatt 540  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||||  |||         ||||||| |||| ||||||||||||||||| |    
T  14893559 gtttccattttatatttactataaatgtttaagatctgtgttattttttcttcttctaggttttaacgtaaatatttttt-tataaatgcacattcaact 14893461  T
Q  541 tatgcaaacnnnnnnnntgttcaaagcggtctttttattttaattttcttaaattacaata 601  Q
    | ||  ||         ||||||     ||||||||||||||| |||||||||||||||||    
T  14893460 tctgtcaaaaaaaaaaatgttca-----gtctttttattttaactttcttaaattacaata 14893405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 415
Target Start/End: Original strand, 49716257 - 49716352
Alignment:
Q  320 tttctatgattccattcctcattggagatacagttttcttttctttaattgatagttgatacatttaacaagatgtccattcaattatacattaac 415  Q
    ||||||||||| |||| || |||| || ||   |||||||| ||||||||||||||||||||||||||| || || |||||||||| ||| |||||    
T  49716257 tttctatgatttcattacttattgcagctatgtttttctttactttaattgatagttgatacatttaaccagttgcccattcaattgtacgttaac 49716352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 464 - 503
Target Start/End: Complemental strand, 43363611 - 43363572
Alignment:
Q  464 tttactataaatgtttaagatatgtgttatcttttcttct 503  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  43363611 tttattataaatgtttaagatatgtgttattttttcttct 43363572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 601
Target Start/End: Original strand, 49716427 - 49716470
Alignment:
Q  558 tgttcaaagcggtctttttattttaattttcttaaattacaata 601  Q
    |||| ||||| |||| ||||||||||||||||||||||||||||    
T  49716427 tgtttaaagctgtctgtttattttaattttcttaaattacaata 49716470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 5062746 - 5062696
Alignment:
Q  94 tgatactccatcgatacgtatcgacggagtatccgatttatgtatttattt 144  Q
    ||||||||| | |||||||||||| |||||||| ||||||| |||||||||    
T  5062746 tgatactccgttgatacgtatcgatggagtatctgatttatttatttattt 5062696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 601
Target Start/End: Complemental strand, 28633903 - 28633874
Alignment:
Q  572 tttttattttaattttcttaaattacaata 601  Q
    ||||||||||||||||||||||||||||||    
T  28633903 tttttattttaattttcttaaattacaata 28633874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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