View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_66 (Length: 256)
Name: NF20058_low_66
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_66 |
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| [»] scaffold0300 (3 HSPs) |
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Alignment Details
Target: scaffold0300 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4072 - 4310
Alignment:
| Q |
1 |
tggaaccaaggaatataagaccatactcaaggaataacttgttttattttacgtaatattattttttgtatgaatgaaattgtctccaaattaattaata |
100 |
Q |
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| T |
4072 |
tggaatcaaggaatataagaccatactcaaggaataacttgttctattttacgtaatattattttttgtatgaatgaaattgtctccaaattaattaata |
4171 |
T |
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| Q |
101 |
caatttataggaatagaaattagagtgataggaactagtattaatttcttgaaacgtagtagagtcaattaaattggctattgcgttattgattttatta |
200 |
Q |
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| T |
4172 |
caatttataggaatagaaattagagtgataggaactagtattaatttcttgaaac---gtagagtcaattaaattggctattgcgttattgattttatta |
4268 |
T |
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| Q |
201 |
aggtgattggatagattggggaaactgtagaaaaatatgcat |
242 |
Q |
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| T |
4269 |
aggtgattggatagattgtggaaactgtagaaaaatatgcat |
4310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 10227 - 10370
Alignment:
| Q |
93 |
aattaatacaatttataggaatagaaattagagtgataggaactagtattaatttcttgaaacgtagtagagtcaattaaattggctattgcgttattga |
192 |
Q |
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| T |
10227 |
aattaatacagtttattggaatagaaattagagtgataggaactagtattaattccttgaaacgtaata---tgagttaaattgaactttgcgttattga |
10323 |
T |
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| Q |
193 |
ttttattaaggtgattggatagattggggaaactgtagaaaaatatg |
239 |
Q |
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| T |
10324 |
tttttttaaggtgattggatagattgtggaaacagtagaagaatatg |
10370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 6591 - 6776
Alignment:
| Q |
35 |
taacttgttttattttacgtaatattattttttgtatgaatgaaattgtctccaaattaattaatacaatttataggaatagaaattagagtgataggaa |
134 |
Q |
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| T |
6591 |
taacttgttttattttacctaatatt--ttgttgaaaggaagaaattgtctccaaattaat----acaatttattggaatagaagttagagtgataggaa |
6684 |
T |
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| Q |
135 |
ctagtattaatt----tcttgaaacgtagtagagtcaattaaattggctattgcgttattgattttattaaggtgattggatagattggggaaac |
225 |
Q |
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| T |
6685 |
ctagtattaattaatttcttgaaacgtaa---agtgagttaaattggcctttgcgttattgattttattaaggtgattggatagaatgtggaaac |
6776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 24694106 - 24693907
Alignment:
| Q |
35 |
taacttgttttattttacgtaatattattttttgtatgaatgaaattgtctccaaattaattaatacaatttataggaatagaaattagagtgataggaa |
134 |
Q |
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| T |
24694106 |
taacttgttttattttacct----tttttttttgtatgaaagaaattgcctccaaattaattaacacaatttatagaaatataaattagagtgataggaa |
24694011 |
T |
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| Q |
135 |
ctagtattaatttcttgaaacgtagtagagtcaattaaattggctattgcgttattgattttattaaggtgattggatagattggggaaactgtagaaaa |
234 |
Q |
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| T |
24694010 |
ctgatattagtt-cttgaaacgtagt---gtgaattaaattggcttttgcgttattgattttattaaagtgattggatagattgtggaaactgtagaaga |
24693915 |
T |
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