View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20058_low_68 (Length: 250)
Name: NF20058_low_68
Description: NF20058
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20058_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 98 - 238
Target Start/End: Complemental strand, 6066508 - 6066368
Alignment:
| Q |
98 |
ctttagattggcaatgtttttcttcgcattcattgcagacttaccatgttgcaaatattaaaaacaatagaaagtatgacagtcgaatatgaaaataagt |
197 |
Q |
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| T |
6066508 |
ctttagattggcaatgtttttcttcgcattcattgcagacttaccatgttgcaaatattaaaaacaatagaaagtatgacagtcgaatatgaaagaaagt |
6066409 |
T |
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| Q |
198 |
cactgtcgacaacataagtaattttccatgttaccagttct |
238 |
Q |
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| T |
6066408 |
cactgtccacaacataagtaattttccatgttaccagttct |
6066368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6066692 - 6066595
Alignment:
| Q |
1 |
cagctcaatacctaaatgatataatgtgaggaaaggaagagaatgaacaaaaatataatatgagtatgggtgaaatagttgtcacaaaacagttttac |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | |||||||||||||||||||||||| |
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| T |
6066692 |
cagctcaatacctaaatgatataatgtgaggaaaggaagagagtgaacaaaaatataatatgagtatgagtaagatagttgtcacaaaacagttttac |
6066595 |
T |
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